Cell Types

The following cell types originate from the NIH Roadmap Epigenomics Project.

 Adipose tissue

  • Adipose cells (Adipose tissue)
  • Fat (UCSD organ recital)

 Cardiovascular (fetal)

  • Fetal Heart (Fetal tissues)

 Cardiovascular system

  • Aorta (UCSD organ recital)
  • Heart (UCSD organ recital)
  • Left Ventricle (UCSD organ recital)
  • Lung (UCSD organ recital)
  • Right atrium (UCSD organ recital)
  • Right ventricle (UCSD organ recital)

 Cord blood

  • CD3+ cord blood (Cord blood lineages)
  • CD19+ cord blood (Cord blood lineages)
  • CD34+ cord blood (Cord blood lineages)

 Endocrine system

  • fAdrenals (Fetal tissues)
  • Adrenals (UCSD organ recital)
  • Pancreas (UCSD organ recital)

 Epidermal

  • Keratinocyte (Skin - Neonate)
  • Melanocyte (Skin - Neonate)

 ES and iPS lineage

  • Embryonic Stem Cell 8% O2 (Pluripotent Cells (ES and iPS cell lines))
  • Embryonic Stem Cell 20% O2 (Pluripotent Cells (ES and iPS cell lines))
  • H1 (Pluripotent Cells (ES and iPS cell lines))
  • H9 (Pluripotent Cells (ES and iPS cell lines))
  • hiPS-18[composite a,b] (Pluripotent Cells (ES and iPS cell lines))
  • hiPS-18b (Pluripotent Cells (ES and iPS cell lines))
  • hiPS-18c (Pluripotent Cells (ES and iPS cell lines))
  • hiPS-20b (Pluripotent Cells (ES and iPS cell lines))
  • HUES64 ES cells (Pluripotent Cells (ES and iPS cell lines))
  • iPS 19.11 (Pluripotent Cells (ES and iPS cell lines))
  • iPS 6.9 (Pluripotent Cells (ES and iPS cell lines))
  • I-3 (Pluripotent Cells (ES and iPS cell lines))
  • WA-7 (Pluripotent Cells (ES and iPS cell lines))

 ES derived lineage

  • hESC derived ectodern, CD56 positive (Human ES cell derivatives and lineage stem cells)
  • hESC derived endoderm, CD184 positive, Endoderm (Human ES cell derivatives and lineage stem cells)
  • HESC derived mesendoderm (Human ES cell derivatives and lineage stem cells)
  • hESC derived mesodern, CD56 positive (Human ES cell derivatives and lineage stem cells)
  • H1-derived Neural Progenitor cells (Human ES cell derivatives and lineage stem cells)
  • H1-derived Mesenchymal stem cells (Human ES cell derivatives and lineage stem cells)
  • H1-derived mesendoderm cells (Human ES cell derivatives and lineage stem cells)
  • H1-derived Trophoblasts like cells (BMP4 treated) (Human ES cell derivatives and lineage stem cells)

 Fibroblasts

  • Fibroblast (Skin - Neonate)

 Gastrointestinal system

  • Intestine large (Solid tissues - Fetal)
  • Intestine small (Solid tissues - Fetal)
  • Esophagus (UCSD organ recital)
  • Gastric Mucosa (UCSD organ recital)
  • Psoas muscles (UCSD organ recital)
  • Sigmoid (UCSD organ recital)
  • Small Bowl (UCSD organ recital)
  • Stomach (Solid tissues - Fetal)
  • colonic mucosa (Solid tissues - Adult)
  • duodenum mucosa (Solid tissues - Adult)
  • duodenum smooth muscle (Solid tissues - Adult)
  • rectal mucosa (Solid tissues - Adult)
  • rectal smooth muscle (Solid tissues - Adult)
  • stomach mucosa (Solid tissues - Adult)
  • stomach smooth muscle (Solid tissues - Adult)

 Immune system

  • CD3+ (Blood - Adult)
  • CD4+ primary cells (Blood - Adult)
  • CD4+ RA+ naive primary cells (Blood - Adult)
  • CD4+ RO+ memory primary cells (Blood - Adult)
  • CD8Naive T cells (Blood - Adult)
  • CD8+ primary cells (Blood - Adult)
  • CD8+ RA+ naive primary cells (Blood - Adult)
  • CD8+ RO+ memory primary cells (Blood - Adult)
  • CD14+ (Blood - Adult)
  • CD19+ (Blood - Adult)
  • CD56+ (Blood - Adult)
  • mobilized CD34 (Blood - Adult)
  • PBMCs (Blood - Adult)
  • Thymus (Solid tissues - Fetal)
  • Spleen (UCSD organ recital)
  • Thymus (UCSD organ recital)
  • Thymic CD4+ (Thymic T cells)
  • Thymic CD8+ (Thymic T cells)
  • Thymic T positive selection (Thymic T cells)
  • Thymic T precursors (Thymic T cells)
  • Tonsillar na├»ve B cells (Tonsillar B cells)

 Mammary tissue

  • Breast Luminal (Mammary Cells - Adult)
  • Breast Myoepithelial (Mammary Cells - Adult)
  • vHMEC (Mammary Cells - Adult)

 Metabolic organ

  • Liver (adult), Endoderm (Solid tissues - Adult)

 Musculoskeletal system

  • Muscle arm (Solid tissues - Fetal)
  • Muscle Back (Solid tissues - Fetal)
  • Muscle trunk (Solid tissues - Fetal)
  • Muscle satellite cells
  • Skeletal muscle

 Nervous system

  • Germinal Matrix (Brain regions - Fetal)
  • hippocampus (Brain regions - Adult)

 Nervous system (Adult)

  • angular gyrus (Brain regions - Adult)
  • anterior caudate (Brain regions - Adult)
  • Caudate (Brain regions - Adult)
  • Cerebellum (Brain regions - Adult)
  • cingulate gyrus (Brain regions - Adult)
  • Dorsal root ganglion (Brain regions - Adult)
  • Frontal Cotex Gray (Brain regions - Adult)
  • Frontal Cotex White (Brain regions - Adult)
  • Globus Pallidus (Brain regions - Adult)
  • Hippocampus  (Brain regions - Adult)
  • inferior temporal lobe (Brain regions - Adult)
  • Insula (Brain regions - Adult)
  • mid frontal lobe (Brain regions - Adult)
  • Putamen (Brain regions - Adult)
  • Substantia Nigra (Brain regions - Adult)

 Nervous system (fetal)

  • Spinal Cord (Solid tissues - Fetal)
  • Primary Cell Culture Neurospheres, Cortex Derived (Neural Stem Cells)
  • Primary Cell Culture Neurospheres, Ganglionic Eminence Derived (Neural Stem Cells)
  • Brain - Germinal Matrix (Brain regions - Fetal)
  • Brain (Brain regions - Fetal)
  • fetal brain (Brain regions - Fetal)

 Primary human Fibroblasts

  • IMR90 (Primary fibroblasts)

 Pulmonary (fetal)

  • Fetal Lung (Fetal tissues)

 Reproductive system

  • Placenta (Solid tissues - Fetal)
  • Ovary (UCSD organ recital)
  • Sperm (Germ line, adult)

 Urinary tract

  • Bladder (UCSD organ recital)