IHEC - EpiATLAS Data Download

Download Observed Data

1. Select datasets to download by highlighting the relevant cells below.

2. Click the “Download” button below to download an “observed.txt” that contains the URLs of the dataset and README files:

3. Run the following wget command to download all the files in the list:

wget -r -np -nH --cut-dirs=4 -R "index.html*" -e robots=off -i observed.txt --wait=1 --random-wait --continue --timeout=30 --tries=3 --no-clobber --show-progress

4. Download README:

5. For questions or assistance with downloading the files, please contact info@ihec-epigenomes.org (please include the observed.txt file for troubleshooting)

	H3K27ac	H3K27me3	H3K36me3	H3K4me1	H3K4me3	H3K9me3	mRNA-Seq	total-RNA-Seq	WGBS(standard)	WGBS(PBAT)
	ChIP-Seq						RNA-Seq		WGBS
Healthy/None	1112	497	483	765	578	460	291	966	385	102

Adipocyte		1	1	1	1	1			2
Adipocyte Subcutaneous Mixed	1	1	1	1	1	1
Adrenal Gland Tissue	4	1	2	2	4	2		3	2
Amnion Tissue		1	1	1	1	1
Amniotic Membrane Tissue							2		1
Aorta Artery Tissue	3	2	3	3	3	3	1	2		1
Ascending Aorta	2	2	2	2	2	2		1
Basal Plate And Chorionic Villi Tissue	2	1	2	1	2	1	3		1
Bipolar Neuron	1	1	1	1	1	1	1	1
B Lymphocyte	8	8	8	9	10	5	1	21	10
Brain		2	1	1	2	1
Brain Amygdala	11	10	11	11	11	11		11	11
Brain Angular Gyrus	1	1	1	1	1	1
Brain Astrocyte	1	1	1	1	1	1	1	1	1
Brain Caudate Nucleus	1	1	1	1	1	1
Brain Cerebellum	46	1	1	1	2	1	1		3
Brain Cingulate Gyrus	1	1	1	1	1	1
Brain Cortex							1
Brain Frontal Lobe BA11								1	2
Brain Frontal Lobe BA44								1
Brain Frontal Lobe BA44-45	4
Brain Frontal Lobe BA46	1	1	1	1	1	1
Brain Frontal Lobe BA8-9								1
Brain Frontal Lobe BA9	46
Brain Frontal Lobe Prefrontal Cortex	2
Brain Ganglionic Eminence					1		1
Brain Hippocampal Formation									1
Brain Hippocampus	1	1	1	1	1	1	1
Brain Insular Cortes									1
Brain Substantia Nigra		1	1	1	1	1
Brain Temporal Lobe	1	1	1	1	1	1
Brain Temporal Lobe BA20-37	2
Brain Temporal Lobe BA22	1
Brain Temporal Lobe BA22-41-42	38
Brain Temporal Lobe BA38	2
Brain Temporal Lobe BA41-42	5
Breast Fibroblast	12	12	12	12	13	11	12		8	2
CD8 Lymphocyte									1
Chorionic Villi Tissue	3	3	3	3	3	3	3		1
Chorion Tissue	1	1	1	1	1		3		1
Colon Ascending Tissue	3	3	3	3	3	3	3		3
Colon Carcinoma		1	1		1			1
Colon Epithelium Cell	12			1	12		7			12
Colon Mucosa	2	2	2	2	2	2	1	1		1
Colon Sigmoid Mixed Tissue	4	2	4	3	4	2	1	3		1
Colon Sigmoid Tissue	5	5	5	5	5	5	5		5
Colon Tissue	7	7	7	7	7	7	7		7
Committed Progenitor									3
Common Lymphoid Progenitor							4		2
Common Myeloid Progenitor							3		2
Cytotrophoblast	14	6	6	6	6	6	9			9
Dendritic Cell	1		1		1			2	2
Dendritic Cell - Immature	3	2	3	3	3	2		3	3
Dendritic Cell - Mature	3	2	3	3	3	1		3	3
Ectodermal Tissue							1		1
Embryonic Stem Cell	3	9	10	9	9	9	4	1	2	2
Endodermal Tissue	1	1	1	1	1	1	1		1
Endometrial Epithelial Tissue	3	3	3	3	3	3	3			3
Endometrium Fibroblast	1	1	1	1	1	1	1	1
Endothelial Cell	2	2	2	2	2	2		2	2
Eosinophil	2	2	2	2	2	2		2	4
Erythrocyte	2	2	2	2	2	2	5	2	2
Erythroid Progenitor Cell	1	1	1	1	1	1	1	2	1
Esophagus Mixed	1	1	1	1	1	1	1			1
Esophagus Mucosa	2	1	2	2	2	2		3
Esophagus Sphincter Mixed	2	1	1	2	2	2		2	1
Esophagus Squamous Epithelium	3	2	2	2	3	1		3	2
Extravillous Cytotrophoblast Cell							1			1
Fibroblast	1	1	1	1	1	1	1	1	1
Fibroblast Foreskin	2	3	3	2	4	2	2
Fibroblast Primary Tissue	1	1	1	1	1	1		1
Germinal Centre B-Cell	7	9	9	9	10	9	6	3	9
Glomerular Visceral Epithelial Cell									1
Granulocyte Monocyte Progenitor	1	1	1	1	1	1	4	1	1
Granulocyte Multipotent Progenitor									3
Haematopoietic Stem Cell	2	2	2	2	2	2	6	1	11
Heart Atrium Right Tissue	2	1	1	2	2	2	1	1		1
Heart Cardioblast Stem Cell		1	1		1
Heart Tissue		1	1	1	1
Heart Ventricle Left Tissue	2	2	2	2	2	2	1	2	1	1
Heart Ventricle Right Tissue	1	1	1	1	1	1	1			1
Hepatocyte	15	12	10	11	15	8	9	7	1	14
Immature Erythrocyte								2
Induced Pluripotent Stem Cell	5	7	7	7	7	6	2	4		3
Keratinocyte	1	1	1	1	1	1	1
Keratinocyte Foreskin	1	2	2	2	2	2	2
Kidney Cell Line	1		1	1	1	1
Kidney Epithelial Cell		1	1		1
Kidney Tissue		1			1				2
Large Intestine Mixed	1	1	1	1	1	1		1	1
Late Memory B Lymphocyte	1	1	1	1	1	1		1	2
Liver Tissue	2	1	2	1	2	2		1	1
Lung Fibroblast	2	2	2	2	2	2		2	2
Lung Tissue	1	1	2	2	2	2	1			1
Lung Upper Lobe	2	2	2	2	2	2		2	2
Lymphoid Progenitor							3		1
Macrophage	32	28	29	31	33	29	6	36	20	6
Mammary Basal Epithelial Cell	8	9	9	9	9	8	7		7
Mammary Epithelial Cell	5	6	6	6	6	6	4	3	4
Mammary Luminal Epithelial Cell									1
Mammary Mature Luminal Epithelial Cell	8	8	8	8	8	8	6		6
Mammary Progenitor Luminal Epithelial Cell	8	8	8	8	8	6	6		6
Megakaryocyte	2	1	3	3	3	1	3	3	5
Megakaryocyte Erythroid Progenitor	1	1	1	1	1	1	3	1	1
Melanocyte	1	1	1	1	1	1		1	1
Melanocyte Foreskin	2	2	2	2	2	2	1
Melanocyte Mole Derived							1		1
Memory B Lymphocyte								1
Memory B Lymphocyte Class Switched	2	2	2	2	2	2		2	1
Mesenchymal Stem Cell	1	2	2	2	2	2	1		1
Mesenchymal Stem Cell Sorted										2
Mesendodermal Tissue		1	1		1		1		1
Mesodermal Tissue	1	1	1	1	1		1			1
Monocyte	223	47	25	55	56	38	4	258	28	2
Mononuclear Cell	1	3	2	3	3	3	2	1	1
Multipotent Lymphoid Progenitor									12
Multipotent Progenitor							5		8
Muscle Cardiac	1	2	2	1	2		1	1
Muscle Cardiac Myoblast		1	1		1
Muscle Precursor Myoblast	1	1	1	1	1	1	1	1	1
Muscle Precursor Myotube	1	1	1	1	1	1		1
Muscle Precursor Satellite		1	1	1	1	1
Muscle Skeletal	6	6	6	5	6	7		23	12	1
Muscle Skeletal Gastrocnemius	3	3	2	3	3	2		3
Muscle Skeletal Psoas	1	1	1	1	1	1	1			1
Muscle Skeletal Sorted										4
Muscle Skeletal Trunk	1	1	1	1	1	1
Muscle Smooth Digestive	1	1	1	1	1	1	1	1	1
Muscle Smooth Duodenum	1	1	1	1	1
Muscle Smooth Large Colon	1	1	1	1	1	1
Muscle Smooth Rectum	1	1	1	1	1
Muscle Smooth Stomach	1	1	1	1	1	1
Myeloid Progenitor	2	5	4	4	5	5	1	2	3
Naive B Lymphocyte	11	11	13	11	13	13	1	7	9
Naive CD4 Lymphocyte									3
Naive CD8 Lymphocyte									3
Natural Killer Cell	5	5	5	6	6	6		4	7
Neural Progenitor Cell	2	3	3	3	3	3	1	1		1
Neural Tissue	1	1	1		1		1
Neuroepithelial Stem Cell	1		1	1	1
Neuroepithelium		2	2	2	2	2	1
Neuronal Progenitor Cell							2			2
Neuron Cell		1	1	1	1	1
Neurosphere	1	3	3	3	3	3	2		2
Neutrophil	183	36	27	180	39	27	1	223	27
Osteoblast	1	1	1	1	1	1		1
Ovarian Tissue							1			1
Pancreatic Alpha Cell							1			1
Pancreatic Beta Cell									1
Pancreatic Islet Cell									5
Pancreatic Tissue	5	3	3	4	4	3	2	1	2	1
Peyers Patch Tissue	2	2	2	2	2	1		2
Placental Tissue	1	1	1	1	1	1
Plasma B Lymphocyte	4	4	4	4	4	4	5	3	5
Preadipocyte							1		1	1
Prostate Tissue	1	1	1	1	1			1
Radial Glial Cell		1	1	2	2
Rectum Mucosa	2	2	2	2	2	2
Skin Fibroblast	2	2	1	1	2	2	1			1
Skin Suprapubic	1	1	1	1	1	1		1
Small Intestine Mucosa		1	1	1	1	1
Small Intestine Tissue	2	2	2	2	2	2	1	1	1	1
Sperm							2	2	2
Spleen Tissue	3	2	3	3	3	3	1	2	1	1
Stomach Mixed Tissue	4	3	4	4	4	4	1	3		1
Stomach Mucosa		1	1	1	1	1
Syncitiotrophoblast Cell							1			1
Syncytiotrophoblast	4	4	4	2	4	4	4			4
T-Cell	5	6	7	10	9	4		19	7
T-Cell CD4 Helper	39	19	18	37	18	18	31	56	20
T-Cell CD4 Memory	2	2	2	2	2	2
T-Cell Double Positve	3	1	2	1	5			2	2
T-Cell Memory CD4 Helper	9	10	9	10	11	9	7	19	2	8
T-Cell Memory CD8 Helper	3	2	4	4	6	5		4	1
T-Cell Naive CD4 Helper	137	19	19	101	20	18	20	155	9	2
T-Cell Naive CD8 Helper	6	6	6	6	7	6		3	5
Testis Tissue								1
Thymus Tissue	2	2	2	2	2	2	1			1
Thyroid Tissue	12	10	11	12	12	12	9	4	10
Tibial Artery Tissue	1	2	2	2	1	2
Tibial Nerve Tissue	2	2	2	2	2	2		3	1
Trophoblast	3	3	3	3	3	3	3			3
Trophoblast Cell							1			1
Trophoblast Tissue	1	1	1	1		1	3		3
Uterine Tissue	1	1		1	1	1		1
Vaginal Tissue	1		1		1			1
Venous Endothelial Cell	4	5	5	5	5	5	1	4	4
Disease	160	25	28	28	25	30	27	125	27	28

B Lymphocyte								28
Brain Cerebellum	47
Brain Frontal Lobe BA44-45	2
Brain Frontal Lobe BA45	2
Brain Frontal Lobe BA9	44
Brain Temporal Lobe BA20	1
Brain Temporal Lobe BA20-37	1
Brain Temporal Lobe BA22-41-42	33
Brain Temporal Lobe BA38	2
Brain Temporal Lobe BA41-42	4
Colon Ascending Adenoma	1	1	1	1	1	1	1		1
Colon Mucosa	2	2	2	2	2	2	2	2		2
Colon Sigmoid Mixed Tissue	1	1	1	1	1	1	1		1
Cytotrophoblast							1			1
Eosinophil									1
Glomerular Visceral Epithelial Cell							2		1	2
Hepatocyte	6	6	6	6	6	6	6	6		6
Induced Pluripotent Stem Cell							1			1
Liver Tissue		1	1	1	1	1	1			1
Macrophage	1	1	1	1	1	1		1		1
Mammary Epithelial Cell	1	1	1	1	1	1	1		1
Mesangial Cell							2			2
Mesenchymal Stem Cell Sorted										2
Monocyte	1		3	2		3		43	5
Muscle Skeletal	4	5	5	4	5	5		5	3
Muscle Skeletal Sorted										4
Neuronal Progenitor Cell							2			2
Placental Cell										2
Preadipocyte							1			1
T-Cell								13	3
T-Cell CD4 Helper				2		2		26	5
T-Cell CD4 Memory	1	1	1	1	1	1		1		1
Thyroid Follicular Adenoma	2	2	2	2	2	2	2		2
Thyroid Tissue	4	4	4	4	4	4	4		4
Cancer	293	153	184	170	196	152	78	68	101	2

Acute Lymphoblastic Leukemia	16	4	13	14	17	9		3	2
Acute Myeloid Leukemia	53	47	49	46	56	46	19	25	30
Acute Promyelocytic Leukemia	17	14	14	13	14	9		11	3
Adenocaricoma	4	4	4	4	5	2	3	1	1
Brain Oligodendroglioma	3	3	3	3	3	3	3		3
Breast Adenocarcinoma	1	1	1	1	1	1	1
Burkitt Lymphoma	3		3	1	3
Cervical Cancer	1	1	1	1	1	1	1		1
Chronic Lymphocytic Leukemia	119	20	20	22	20	20	13	7	19
Chronic Myelogenous Leukemia	2	2	2	2	2	2	2		2
Colon Adenocarcinoma Cell Line			1		1
Colon Ascending Adenocarcinoma	3	3	3	3	3	3	3		3
Colon Ascending Carcinoma	1	1	1	1	1	1	1		1
Colon Carcinoma	1	1	1	1	1	1	1
Colon Sigmoid Adenocarcinoma	1	1	1	1	1	1	1		1
Diffuse Large B-Cell Lymphoma	11	4	11	5	12	6		2	1
Epithelial Submaxillary Gland Carcinoma	1	1	1	1	1
Ewing Sarcoma	2	1	2	2	2	2
Follicular Lymphoma	3		1		3
Glioblastoma	1	1	1	1	1	1	1		1
Hepatocarcinoma Cell Line	4	2	4	4	4	4	4	5	1	2
Kidney Cancer	8	7	8	8	8	8		2	7
Lung Carcinoma		1	1	1	1	1
Mantle Cell Lymphoma	5	5	5	5	5	5		5	5
Multiple Myeloma	6	6	6	7	6	4	11	3	5
Neuroblastoma	1	2	2	1	2		2		1
Oligodendroglioma	8	8	8	8	8	8	8		8
Pancreatic Cancer	1	1	1	1	1	1	1
T-Cell Acute Lymphoblastic Leukemia	11	6	10	7	7	7		1
T-Cell Prolymphocytic Leukemia	3	3	3	3	3	3		3	3
Thyroid Papillary Carcinoma	3	3	3	3	3	3	3		3

Download Imputed Data

1. Select datasets to download by highlighting the relevant cells below.

*.pval.bw : - log10(p-value) signal track (bigWig)

*.narrowPeak.gz : macs2 narrow peaks calls

*.broadPeak.gz : macs2 broad peaks calls

*.DNAMethyl.bw : fractional methylation track (bigWig)

2. Click the “Download” button below to download an “imputed.txt” that contains the URLs of the dataset and README files:

3. Run the following wget command to download all files in the list:

wget -r -np -nH --cut-dirs=4 -R "index.html*" -e robots=off -i imputed.txt --wait=1 --random-wait --continue --timeout=30 --tries=3 --no-clobber --show-progress

4. Download README:

5. For questions or assistance with downloading the files, please contact info@ihec-epigenomes.org (please include the imputed.txt file for troubleshooting)

	H3K27ac	H3K27me3	H3K36me3	H3K4me1	H3K4me3	H3K9me3	WGBS
	ChIP-Seq						WGBS
Healthy/None	737	496	482	749	564	459	240

Adipocyte		1	1	1	1	1
Adipocyte Subcutaneous Mixed	1	1	1	1	1	1
Adrenal Gland Tissue	4	1	2	2	4	2	2
Amnion Tissue		1	1	1	1	1
Aorta Artery Tissue	3	2	3	3	3	3
Ascending Aorta	2	2	2	2	2	2
Basal Plate And Chorionic Villi Tissue	2	1	2	1	2	1	1
Bipolar Neuron	1	1	1	1	1	1
B Lymphocyte	8	8	8	9	10	5	4
Brain		2	1	1	2	1
Brain Amygdala	11	10	11	11	11	11	11
Brain Angular Gyrus	1	1	1	1	1	1
Brain Astrocyte	1	1	1	1	1	1
Brain Caudate Nucleus	1	1	1	1	1	1
Brain Cerebellum		1	1	1	1	1	1
Brain Cingulate Gyrus	1	1	1	1	1	1
Brain Frontal Lobe BA46	1	1	1	1	1	1
Brain Hippocampus	1	1	1	1	1	1
Brain Substantia Nigra		1	1	1	1	1
Brain Temporal Lobe	1	1	1	1	1	1
Breast Fibroblast	12	12	12	12	12	11	8
Chorionic Villi Tissue	3	3	3	3	3	3	1
Chorion Tissue	1	1	1	1	1		1
Colon Ascending Tissue	3	3	3	3	3	3	3
Colon Carcinoma		1	1		1
Colon Epithelium Cell	12			1	12
Colon Mucosa	2	2	2	2	2	2
Colon Sigmoid Mixed Tissue	4	2	4	3	4	2
Colon Sigmoid Tissue	5	5	5	5	5	5	5
Colon Tissue	7	7	7	7	7	7	7
Cytotrophoblast	6	6	6	6	6	6
Dendritic Cell	1		1		1		1
Dendritic Cell - Immature	3	2	3	3	3	2	3
Dendritic Cell - Mature	3	2	3	3	3	1	3
Embryonic Stem Cell	3	9	10	9	9	9	2
Endodermal Tissue	1	1	1	1	1	1	1
Endometrial Epithelial Tissue	3	3	3	3	3	3
Endometrium Fibroblast	1	1	1	1	1	1
Endothelial Cell	2	2	2	2	2	2	1
Eosinophil	2	2	2	2	2	2	1
Erythrocyte	2	2	2	2	2	2	2
Erythroid Progenitor Cell	1	1	1	1	1	1	1
Esophagus Mixed	1	1	1	1	1	1
Esophagus Mucosa	2	1	2	2	2	2
Esophagus Sphincter Mixed	2	1	1	2	2	2	1
Esophagus Squamous Epithelium	3	2	2	2	3	1	2
Fibroblast	1	1	1	1	1	1	1
Fibroblast Foreskin	2	3	3	2	3	2
Fibroblast Primary Tissue	1	1	1	1	1	1
Germinal Centre B-Cell	7	9	9	9	9	9	9
Granulocyte Monocyte Progenitor	1	1	1	1	1	1	1
Haematopoietic Stem Cell	2	2	2	2	2	2	2
Heart Atrium Right Tissue	2	1	1	2	2	2
Heart Cardioblast Stem Cell		1	1		1
Heart Tissue		1	1	1	1
Heart Ventricle Left Tissue	2	2	2	2	2	2	1
Heart Ventricle Right Tissue	1	1	1	1	1	1
Hepatocyte	15	12	10	11	15	8	1
Induced Pluripotent Stem Cell	5	7	7	7	7	6
Keratinocyte	1	1	1	1	1	1
Keratinocyte Foreskin	1	2	2	2	2	2
Kidney Cell Line	1		1	1	1	1
Kidney Epithelial Cell		1	1		1
Kidney Tissue		1			1
Large Intestine Mixed	1	1	1	1	1	1	1
Late Memory B Lymphocyte	1	1	1	1	1	1
Liver Tissue	2	1	2	1	2	2	1
Lung Fibroblast	2	2	2	2	2	2	2
Lung Tissue	1	1	2	2	2	2
Lung Upper Lobe	2	2	2	2	2	2	2
Macrophage	32	28	29	31	33	29	17
Mammary Basal Epithelial Cell	8	9	9	9	9	8	6
Mammary Epithelial Cell	5	6	6	6	6	6	3
Mammary Mature Luminal Epithelial Cell	8	8	8	8	8	8	6
Mammary Progenitor Luminal Epithelial Cell	8	8	8	8	8	6	6
Megakaryocyte	2	1	3	3	3	1	2
Megakaryocyte Erythroid Progenitor	1	1	1	1	1	1	1
Melanocyte	1	1	1	1	1	1	1
Melanocyte Foreskin	2	2	2	2	2	2
Memory B Lymphocyte Class Switched	2	2	2	2	2	2	1
Mesenchymal Stem Cell	1	2	2	2	2	2	1
Mesendodermal Tissue		1	1		1
Mesodermal Tissue	1	1	1	1	1
Monocyte	61	47	25	54	55	38	16
Mononuclear Cell	1	3	2	3	3	3	1
Muscle Cardiac	1	2	2	1	2
Muscle Cardiac Myoblast		1	1		1
Muscle Precursor Myoblast	1	1	1	1	1	1	1
Muscle Precursor Myotube	1	1	1	1	1	1
Muscle Precursor Satellite		1	1	1	1	1
Muscle Skeletal	6	5	6	4	6	6	4
Muscle Skeletal Gastrocnemius	3	3	2	3	3	2
Muscle Skeletal Psoas	1	1	1	1	1	1
Muscle Skeletal Trunk	1	1	1	1	1	1
Muscle Smooth Digestive	1	1	1	1	1	1	1
Muscle Smooth Duodenum	1	1	1	1	1
Muscle Smooth Large Colon	1	1	1	1	1	1
Muscle Smooth Rectum	1	1	1	1	1
Muscle Smooth Stomach	1	1	1	1	1	1
Myeloid Progenitor	2	5	4	4	5	5	2
Naive B Lymphocyte	11	11	12	11	13	13	4
Natural Killer Cell	5	5	5	6	6	6	3
Neural Progenitor Cell	2	3	3	3	3	3
Neural Tissue	1	1	1		1
Neuroepithelial Stem Cell	1		1	1	1
Neuroepithelium		2	2	2	2	2
Neuron Cell		1	1	1	1	1
Neurosphere	1	3	3	3	3	3
Neutrophil	174	36	27	175	34	27	24
Osteoblast	1	1	1	1	1	1
Pancreatic Tissue	5	3	3	4	4	3	2
Peyers Patch Tissue	2	2	2	2	2	1
Placental Tissue	1	1	1	1	1	1
Plasma B Lymphocyte	4	4	4	4	4	4	3
Prostate Tissue	1	1	1	1	1
Radial Glial Cell		1	1	2	2
Rectum Mucosa	2	2	2	2	2	2
Skin Fibroblast	2	2	1	1	2	2
Skin Suprapubic	1	1	1	1	1	1
Small Intestine Mucosa		1	1	1	1	1
Small Intestine Tissue	2	2	2	2	2	2	1
Spleen Tissue	3	2	3	3	3	3	1
Stomach Mixed Tissue	4	3	4	4	4	4
Stomach Mucosa		1	1	1	1	1
Syncytiotrophoblast	4	4	4	2	4	4
T-Cell	5	6	7	10	9	4	3
T-Cell CD4 Helper	28	19	18	29	18	18	15
T-Cell CD4 Memory	2	2	2	2	2	2
T-Cell Double Positve	3	1	2	1	4		2
T-Cell Memory CD4 Helper	9	10	9	10	10	9
T-Cell Memory CD8 Helper	3	2	4	4	6	5
T-Cell Naive CD4 Helper	99	19	19	100	20	18	9
T-Cell Naive CD8 Helper	5	6	6	6	6	6	5
Thymus Tissue	2	2	2	2	2	2
Thyroid Tissue	12	10	11	12	12	12	10
Tibial Artery Tissue	1	2	2	2	1	2
Tibial Nerve Tissue	2	2	2	2	2	2	1
Trophoblast	3	3	3	3	3	3
Trophoblast Tissue	1	1	1	1		1	1
Uterine Tissue	1	1		1	1	1
Vaginal Tissue	1		1		1
Venous Endothelial Cell	4	5	5	5	5	5	4
Disease	24	25	28	28	25	29	14

Colon Ascending Adenoma	1	1	1	1	1	1	1
Colon Mucosa	2	2	2	2	2	2
Colon Sigmoid Mixed Tissue	1	1	1	1	1	1	1
Hepatocyte	6	6	6	6	6	6
Liver Tissue		1	1	1	1	1
Macrophage	1	1	1	1	1	1
Mammary Epithelial Cell	1	1	1	1	1	1	1
Monocyte	1		3	2		2	2
Muscle Skeletal	4	5	5	4	5	5	3
T-Cell CD4 Helper				2		2
T-Cell CD4 Memory	1	1	1	1	1	1
Thyroid Follicular Adenoma	2	2	2	2	2	2	2
Thyroid Tissue	4	4	4	4	4	4	4
Cancer	193	153	184	170	194	150	98

Acute Lymphoblastic Leukemia	16	4	13	14	17	8	1
Acute Myeloid Leukemia	53	47	49	46	56	45	30
Acute Promyelocytic Leukemia	14	14	14	13	14	9	3
Adenocaricoma	4	4	4	4	4	2	1
Brain Oligodendroglioma	3	3	3	3	3	3	3
Breast Adenocarcinoma	1	1	1	1	1	1
Burkitt Lymphoma	3		3	1	3
Cervical Cancer	1	1	1	1	1	1	1
Chronic Lymphocytic Leukemia	22	20	20	22	20	20	19
Chronic Myelogenous Leukemia	2	2	2	2	2	2	2
Colon Adenocarcinoma Cell Line			1		1
Colon Ascending Adenocarcinoma	3	3	3	3	3	3	3
Colon Ascending Carcinoma	1	1	1	1	1	1	1
Colon Carcinoma	1	1	1	1	1	1
Colon Sigmoid Adenocarcinoma	1	1	1	1	1	1	1
Diffuse Large B-Cell Lymphoma	11	4	11	5	11	6	1
Epithelial Submaxillary Gland Carcinoma	1	1	1	1	1
Ewing Sarcoma	2	1	2	2	2	2
Follicular Lymphoma	3		1		3
Glioblastoma	1	1	1	1	1	1	1
Hepatocarcinoma Cell Line	4	2	4	4	4	4	1
Kidney Cancer	8	7	8	8	8	8	7
Lung Carcinoma		1	1	1	1	1
Mantle Cell Lymphoma	5	5	5	5	5	5	5
Multiple Myeloma	6	6	6	7	6	4	3
Neuroblastoma	1	2	2	1	2		1
Oligodendroglioma	8	8	8	8	8	8	8
Pancreatic Cancer	1	1	1	1	1	1
T-Cell Acute Lymphoblastic Leukemia	11	6	10	7	7	7
T-Cell Prolymphocytic Leukemia	3	3	3	3	3	3	3
Thyroid Papillary Carcinoma	3	3	3	3	3	3	3

Download Post Processed Data

1. Select datasets to download by highlighting the relevant cells below.

2. Click the “Download” button below to download a "post_processed.txt" that contains the URLs of the dataset and README files:

3. Run the following wget command to download all the files in the list:

wget -r -np -nH --cut-dirs=4 -R "index.html*" -e robots=off -i post_processed.txt --wait=1 --random-wait --continue --timeout=30 --tries=3 --no-clobber --show-progress

4. Download README:

5. For questions or assistance with downloading the files, please contact info@ihec-epigenomes.org (please include the post-processed.txt file for troubleshooting)

	ChromHMM (ChIP-Seq observed & imputed)	ChromHMM (GECSI)	ChromActivity	gABC Interactions	5mC segmentation (Hygeia)	5mC segmentation (MethylSeekR)	CNV (WGBS, Control-FREEC)	CNV (WGS, Control-FREEC)
Healthy/None	1224	316	1224	1112	322	384	7

Adipocyte	1		1			2	2
Adipocyte Subcutaneous Mixed	1		1	1
Adrenal Gland Tissue	4		4	4	2	2
Amnion Tissue	1		1
Amniotic Membrane Tissue		2
Aorta Artery Tissue	3		3	3	1	1
Ascending Aorta	2		2	2
Basal Plate And Chorionic Villi Tissue	2	1	2	2	1	1
Bipolar Neuron	1		1	1
B Lymphocyte	10	14	10	8	4	6
Brain	2		2
Brain Amygdala	11		11	11	11	11
Brain Angular Gyrus	1		1	1
Brain Astrocyte	1	1	1	1		1
Brain Caudate Nucleus	1		1	1
Brain Cerebellum	48	1	48	46	1	3
Brain Cingulate Gyrus	1		1	1
Brain Cortex		1
Brain Frontal Lobe BA11		1				1
Brain Frontal Lobe BA44		1
Brain Frontal Lobe BA44-45	4		4	4
Brain Frontal Lobe BA46	1		1	1
Brain Frontal Lobe BA8-9		1
Brain Frontal Lobe BA9	46		46	46
Brain Frontal Lobe Prefrontal Cortex	2		2	2
Brain Ganglionic Eminence	1		1
Brain Hippocampal Formation						1
Brain Hippocampus	1		1	1
Brain Insular Cortes						1
Brain Substantia Nigra	1		1
Brain Temporal Lobe	1		1	1
Brain Temporal Lobe BA20-37	2		2	2
Brain Temporal Lobe BA22	1		1	1
Brain Temporal Lobe BA22-41-42	38		38	38
Brain Temporal Lobe BA38	2		2	2
Brain Temporal Lobe BA41-42	5		5	5
Breast Fibroblast	13		13	12	10	10
CD8 Lymphocyte
Chorionic Villi Tissue	3		3	3	1	1
Chorion Tissue	1	2	1	1	1	1
Colon Ascending Tissue	3		3	3	3	3
Colon Carcinoma	1		1
Colon Epithelium Cell	12		12	12	12	12
Colon Mucosa	2		2	2	1	1
Colon Sigmoid Mixed Tissue	4		4	4	1	1
Colon Sigmoid Tissue	5		5	5	5	5
Colon Tissue	7		7	7	7	7
Committed Progenitor
Common Lymphoid Progenitor		4
Common Myeloid Progenitor		3
Cytotrophoblast	14	3	14	14	6	6
Dendritic Cell	1	1	1	1	1	2
Dendritic Cell - Immature	3		3	3	3	3
Dendritic Cell - Mature	3		3	3	3	3
Ectodermal Tissue		1				1
Embryonic Stem Cell	10		10	3	4	4
Endodermal Tissue	1		1	1	1	1
Endometrial Epithelial Tissue	3		3	3	3	3
Endometrium Fibroblast	1		1	1
Endothelial Cell	2	1	2	2	1	2
Eosinophil	2	1	2	2	1	4
Erythrocyte	2	5	2	2	2	2
Erythroid Progenitor Cell	1	2	1	1	1	1
Esophagus Mixed	1		1	1	1	1
Esophagus Mucosa	2	1	2	2
Esophagus Sphincter Mixed	2		2	2	1	1
Esophagus Squamous Epithelium	3		3	3	2	2
Extravillous Cytotrophoblast Cell		1
Fibroblast	1		1	1	1	1
Fibroblast Foreskin	4		4	2
Fibroblast Primary Tissue	1		1	1
Germinal Centre B-Cell	10		10	7	9	9
Glomerular Visceral Epithelial Cell						1
Granulocyte Monocyte Progenitor	1	4	1	1	1	1
Granulocyte Multipotent Progenitor
Haematopoietic Stem Cell	2	5	2	2	2	2
Heart Atrium Right Tissue	2		2	2	1	1
Heart Cardioblast Stem Cell	1		1
Heart Tissue	1		1
Heart Ventricle Left Tissue	2	1	2	2	2	2
Heart Ventricle Right Tissue	1		1	1	1	1
Hepatocyte	15		15	15	15	15
Immature Erythrocyte		2
Induced Pluripotent Stem Cell	7	3	7	5	2	3
Keratinocyte	1		1	1
Keratinocyte Foreskin	2		2	1
Kidney Cell Line	1		1	1
Kidney Epithelial Cell	1		1
Kidney Tissue	1		1			2
Large Intestine Mixed	1		1	1	1	1
Late Memory B Lymphocyte	1	1	1	1		2
Liver Tissue	2		2	2	1	1
Lung Fibroblast	2		2	2	2	2
Lung Tissue	2		2	1	1	1
Lung Upper Lobe	2		2	2	2	2
Lymphoid Progenitor		3
Macrophage	34	12	34	32	23	25
Mammary Basal Epithelial Cell	9		9	8	6	6
Mammary Epithelial Cell	6	1	6	5	3	3
Mammary Luminal Epithelial Cell
Mammary Mature Luminal Epithelial Cell	8		8	8	6	6
Mammary Progenitor Luminal Epithelial Cell	8		8	8	6	6
Megakaryocyte	3	4	3	2	2	2
Megakaryocyte Erythroid Progenitor	1	3	1	1	1	1
Melanocyte	1		1	1	1	1
Melanocyte Foreskin	2		2	2
Melanocyte Mole Derived		1
Memory B Lymphocyte		1
Memory B Lymphocyte Class Switched	2	1	2	2	1	1
Mesenchymal Stem Cell	2		2	1	1	1
Mesenchymal Stem Cell Sorted						2
Mesendodermal Tissue	1	1	1			1
Mesodermal Tissue	1		1	1	1	1
Monocyte	228	71	228	223	18	19
Mononuclear Cell	3		3	1	1	1
Multipotent Lymphoid Progenitor
Multipotent Progenitor		5
Muscle Cardiac	2		2	1
Muscle Cardiac Myoblast	1		1
Muscle Precursor Myoblast	1		1	1	1	1
Muscle Precursor Myotube	1		1	1
Muscle Precursor Satellite	1		1
Muscle Skeletal	9	17	9	6	4	7
Muscle Skeletal Gastrocnemius	3		3	3
Muscle Skeletal Psoas	1		1	1	1	1
Muscle Skeletal Sorted						4
Muscle Skeletal Trunk	1		1	1
Muscle Smooth Digestive	1		1	1	1	1
Muscle Smooth Duodenum	1		1	1
Muscle Smooth Large Colon	1		1	1
Muscle Smooth Rectum	1		1	1
Muscle Smooth Stomach	1		1	1
Myeloid Progenitor	5	1	5	2	2	2
Naive B Lymphocyte	14	1	14	11	4	6
Naive CD4 Lymphocyte
Naive CD8 Lymphocyte
Natural Killer Cell	6	1	6	5	3	4
Neural Progenitor Cell	3		3	2	1	1
Neural Tissue	1		1	1
Neuroepithelial Stem Cell	1		1	1
Neuroepithelium	2		2
Neuronal Progenitor Cell		2				2
Neuron Cell	1		1
Neurosphere	3	1	3	1		2
Neutrophil	197	35	197	183	24	24
Osteoblast	1		1	1
Ovarian Tissue		1				1
Pancreatic Alpha Cell		1				1
Pancreatic Beta Cell						1	1
Pancreatic Islet Cell						5	3
Pancreatic Tissue	5		5	5	3	3
Peyers Patch Tissue	2		2	2
Placental Tissue	1		1	1
Plasma B Lymphocyte	4	4	4	4	3	5
Preadipocyte		1				2	1
Prostate Tissue	1		1	1
Radial Glial Cell	2		2
Rectum Mucosa	2		2	2
Skin Fibroblast	2		2	2	1	1
Skin Suprapubic	1		1	1
Small Intestine Mucosa	1		1
Small Intestine Tissue	2		2	2	2	2
Sperm		4				2
Spleen Tissue	3		3	3	2	2
Stomach Mixed Tissue	4	1	4	4	1	1
Stomach Mucosa	1		1
Syncitiotrophoblast Cell		1
Syncytiotrophoblast	4		4	4	4	4
T-Cell	10	11	10	5	3	5
T-Cell CD4 Helper	49	10	49	39	15	15
T-Cell CD4 Memory	2		2	2
T-Cell Double Positve	5	2	5	3	2	2
T-Cell Memory CD4 Helper	11	12	11	9	7	9
T-Cell Memory CD8 Helper	6	4	6	3
T-Cell Naive CD4 Helper	140	32	140	137	11	11
T-Cell Naive CD8 Helper	8	1	8	6	5	5
Testis Tissue		1
Thymus Tissue	2		2	2	1	1
Thyroid Tissue	12	1	12	12	10	10
Tibial Artery Tissue	2		2	1
Tibial Nerve Tissue	2	1	2	2	1	1
Trophoblast	3		3	3	3	3
Trophoblast Cell		1
Trophoblast Tissue	1	2	1	1	1	3
Uterine Tissue	1		1	1
Vaginal Tissue	1		1	1
Venous Endothelial Cell	5		5	4	4	4
Disease	167	118	167	160	25	40	1

B Lymphocyte		28
Brain Cerebellum	47		47	47
Brain Frontal Lobe BA44-45	2		2	2
Brain Frontal Lobe BA45	2		2	2
Brain Frontal Lobe BA9	44		44	44
Brain Temporal Lobe BA20	1		1	1
Brain Temporal Lobe BA20-37	1		1	1
Brain Temporal Lobe BA22-41-42	33		33	33
Brain Temporal Lobe BA38	2		2	2
Brain Temporal Lobe BA41-42	4		4	4
Colon Ascending Adenoma	1		1	1	1	1
Colon Mucosa	2		2	2	2	2
Colon Sigmoid Mixed Tissue	1		1	1	1	1
Cytotrophoblast		1
Eosinophil						1
Glomerular Visceral Epithelial Cell		2				3
Hepatocyte	6		6	6	6	6
Induced Pluripotent Stem Cell		1				1
Liver Tissue	1		1		1	1
Macrophage	1		1	1	1	1
Mammary Epithelial Cell	1		1	1	1	1	1
Mesangial Cell		2				2
Mesenchymal Stem Cell Sorted						2
Monocyte	4	41	4	1	2	2
Muscle Skeletal	5	1	5	4	3	3
Muscle Skeletal Sorted						3
Neuronal Progenitor Cell		2				2
Placental Cell
Preadipocyte		1				1
T-Cell		13
T-Cell CD4 Helper	2	26	2
T-Cell CD4 Memory	1		1	1	1	1
Thyroid Follicular Adenoma	2		2	2	2	2
Thyroid Tissue	4		4	4	4	4
Cancer	307	15	307	293	98	102	88	23

Acute Lymphoblastic Leukemia	18	1	18	16	1	1	2
Acute Myeloid Leukemia	58		58	53	30	30	21
Acute Promyelocytic Leukemia	17		17	17	3	3	1
Adenocaricoma	5		5	4	1	1
Brain Oligodendroglioma	3		3	3	3	3	3	1
Breast Adenocarcinoma	1		1	1
Burkitt Lymphoma	3		3	3
Cervical Cancer	1		1	1	1	1	1
Chronic Lymphocytic Leukemia	119		119	119	19	19	19	13
Chronic Myelogenous Leukemia	2		2	2	2	2	1
Colon Adenocarcinoma Cell Line	1		1
Colon Ascending Adenocarcinoma	3		3	3	3	3	3	3
Colon Ascending Carcinoma	1		1	1	1	1	1	1
Colon Carcinoma	1		1	1
Colon Sigmoid Adenocarcinoma	1		1	1	1	1	1	1
Diffuse Large B-Cell Lymphoma	12		12	11	1	1	1
Epithelial Submaxillary Gland Carcinoma	1		1	1
Ewing Sarcoma	2		2	2
Follicular Lymphoma	3		3	3
Glioblastoma	1		1	1	1	1	1
Hepatocarcinoma Cell Line	4	2	4	4	1	3	1
Kidney Cancer	8		8	8	7	7	7
Lung Carcinoma	1		1
Mantle Cell Lymphoma	5		5	5	5	5	5
Multiple Myeloma	7	11	7	6	3	5	5
Neuroblastoma	2		2	1	1	1	1
Oligodendroglioma	8		8	8	8	8	8	2
Pancreatic Cancer	1		1	1
T-Cell Acute Lymphoblastic Leukemia	12	1	12	11
T-Cell Prolymphocytic Leukemia	3		3	3	3	3	3
Thyroid Papillary Carcinoma	3		3	3	3	3	3	2

Download Bulk Data

1. Click the buttons on the left column to directly download the URL list of the dataset and README files.

2. IMPORTANT Prior to running the wget command, please replace the "URL_File" with the downloaded file name (e.g. WGBS_matrices.file_list). Omitting this step will result in the command not being able to locate the desired files.

3. Run the following wget command to download all the files in the list:

wget -r -np -nH --cut-dirs=4 -R "index.html*" -e robots=off -i URL_File.txt --wait=1 --random-wait --continue --timeout=30 --tries=3 --no-clobber --show-progress

4. For questions or assistance with downloading the files, please contact info@ihec-epigenomes.org (please include the data file for troubleshooting)

Download Data and README:	Download README:

Welcome to the EpiATLAS Data Download Portal

Dataset Grids

References