/CEMT/A34002_3_lane_gembs

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SAMPLE A34002_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1045616744 100.00 % 522808372 100.00 % 522808372 100.00 %
General Reads 1033680625 98.86 % 518663307 99.21 % 515017318 98.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 640129 0.06 % 320735 0.06 % 319394 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11295990 1.08 % 3824330 0.73 % 7471660 1.43 %
Bisulfite_reads C2T 530200808 50.71 % 265988276 50.88 % 264212532 50.54 %
Bisulfite_reads G2A 504119946 48.21 % 252995766 48.39 % 251124180 48.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 433316321
Average Unique 82.88 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41679947171 39.47 % 16546074535 31.34 % 25133872636 47.60 %
Base Counts Overall C 10729218549 10.16 % 346152300 0.66 % 10383066249 19.66 %
Base Counts Overall G 10880607539 10.30 % 10537109300 19.96 % 343498239 0.65 %
Base Counts Overall T 41237111939 39.05 % 24841772851 47.05 % 16395339088 31.05 %
Base Counts Overall N 1080405946 1.02 % 532536586 1.01 % 547869360 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9959592004703259
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 495685200



Mapping Quality

Mapping Quality Histogram
A34002_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34002_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C2MEJACXX_7_2
C2RT2ACXX_2_2
C2RT2ACXX_1_2