/EXTERNAL BLUEPRINT/K006263_19_lane_gembs/C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086971_19

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SAMPLE K006263_19_lane_gembs LANE C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086971_19

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2109803278 100.00 % 1054901639 100.00 % 1054901639 100.00 %
General Reads 2062505489 97.76 % 1034301935 98.05 % 1028203554 97.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9630996 0.46 % 4828466 0.46 % 4802530 0.46 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37666793 1.79 % 15771238 1.50 % 21895555 2.08 %
Bisulfite_reads C2T 1073929613 50.90 % 538568022 51.05 % 535361591 50.75 %
Bisulfite_reads G2A 998206872 47.31 % 500562379 47.45 % 497644493 47.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 843127659
Average Unique 79.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 79789232784 37.08 % 30688991371 28.52 % 49100241413 45.63 %
Base Counts Overall C 26520482475 12.32 % 1298293543 1.21 % 25222188932 23.44 %
Base Counts Overall G 27046002837 12.57 % 25828379328 24.00 % 1217623509 1.13 %
Base Counts Overall T 79607448420 36.99 % 48686952350 45.25 % 30920496070 28.74 %
Base Counts Overall N 2236767840 1.04 % 1097350586 1.02 % 1139417254 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9982958464619043
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1002596086



Mapping Quality

Mapping Quality Histogram
C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086971_19.mapq.png



Read Length

Read Length Reads
101 1054901639
101 1054901639



Insert Size Plot

Insert Size Histogram
C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086971_19.isize.png