/EXTERNAL BLUEPRINT/mapping_coverage/K006263_19_lane_gembs
BACK
SAMPLE K006263_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2015839678 |
100% |
183001754813 |
100% |
| Mapped |
1994510491 |
98.94 % |
180847506926 |
98.82 % |
| Passed |
1602166864 |
79.48 % |
141220800599 |
77.17 % |
| NotPassed |
392343627 |
19.46 % |
39626706327 |
21.65 % |
| |
|
|
|
|
| LowMAPQ |
313944646 |
15.57 % |
31708409246 |
17.33 % |
| MateUnmapped |
21329187 |
1.06 % |
2154247887 |
1.18 % |
| Duplicate |
46726937 |
2.32 % |
4719420637 |
2.58 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
20618 |
0.00 % |
2082418 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31651408 |
1.57 % |
3196792208 |
1.75 % |
| Unmapped |
21329187 |
1.06 % |
2154247887 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
161810814775 |
100% |
| Passed |
130685419226 |
80.76 % |
| Trimmed |
6925151669 |
4.28 % |
| Clipped |
350274232 |
0.22 % |
| Overlapping |
20239739944 |
12.51 % |
| LowQuality |
3610229704 |
2.23 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |