/EXTERNAL BLUEPRINT/methylation/K006263_19_lane_gembs

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SAMPLE K006263_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26965304 24194453 89.72 %
NonRefCpG 287872 189895 65.97 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006263_19_lane_gembs_coverage_refCpG.png ./IMG//K006263_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006263_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006263_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006263_19_lane_gembs_quality_refcpg.png ./IMG//K006263_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006263_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6284256 12.06 % 5551323 11.45 % 69860 13.08 % 28741 7.02 %
Intermediate (0.3-0.7) 6330734 12.15 % 5300268 10.93 % 92516 17.33 % 56119 13.70 %
Methylated (0.7-1) 39481365 75.79 % 37622368 77.61 % 371547 69.59 % 324631 79.28 %
Median Methylation 0.870 0.880 0.840 0.870