/EXTERNAL BLUEPRINT/K006289_14_lane_gembs

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SAMPLE K006289_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1056677628 100.00 % 528338814 100.00 % 528338814 100.00 %
General Reads 1003004420 94.92 % 503158097 95.23 % 499846323 94.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 14793310 1.40 % 7415352 1.40 % 7377958 1.40 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38879898 3.68 % 17765365 3.36 % 21114533 4.00 %
Bisulfite_reads C2T 536939868 50.81 % 269363735 50.98 % 267576133 50.64 %
Bisulfite_reads G2A 480857862 45.51 % 241209714 45.65 % 239648148 45.36 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 407769074
Average Unique 77.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38701563655 35.91 % 15330211339 28.45 % 23371352316 43.37 %
Base Counts Overall C 14717490174 13.65 % 936899644 1.74 % 13780590530 25.57 %
Base Counts Overall G 14875782472 13.80 % 13984684167 25.95 % 891098305 1.65 %
Base Counts Overall T 38386811163 35.62 % 23105822815 42.88 % 15280988348 28.36 %
Base Counts Overall N 1099470592 1.02 % 532941063 0.99 % 566529529 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989489506215479
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 494734628



Mapping Quality

Mapping Quality Histogram
K006289_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006289_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00390.Bisulfite-Seq.DNA_Methylation.EGAX00001147731_14