/EXTERNAL BLUEPRINT/mapping_coverage/K006289_14_lane_gembs
BACK
SAMPLE K006289_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
989536527 |
100% |
89652877202 |
100% |
| Mapped |
979781450 |
99.01 % |
88667614425 |
98.90 % |
| Passed |
781715182 |
79.00 % |
68662921357 |
76.59 % |
| NotPassed |
198066268 |
20.02 % |
20004693068 |
22.31 % |
| |
|
|
|
|
| LowMAPQ |
171367120 |
17.32 % |
17308079120 |
19.31 % |
| MateUnmapped |
9755077 |
0.99 % |
985262777 |
1.10 % |
| Duplicate |
13478189 |
1.36 % |
1361297089 |
1.52 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
13498 |
0.00 % |
1363298 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13207443 |
1.33 % |
1333951743 |
1.49 % |
| Unmapped |
9755077 |
0.99 % |
985262777 |
1.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78948117126 |
100% |
| Passed |
64299184903 |
81.44 % |
| Trimmed |
3355505156 |
4.25 % |
| Clipped |
89114876 |
0.11 % |
| Overlapping |
10196080893 |
12.91 % |
| LowQuality |
1008231298 |
1.28 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |