/EXTERNAL BLUEPRINT/methylation/K006289_14_lane_gembs

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SAMPLE K006289_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26692408 20451872 76.62 %
NonRefCpG 331425 155261 46.85 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006289_14_lane_gembs_coverage_refCpG.png ./IMG//K006289_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006289_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006289_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006289_14_lane_gembs_quality_refcpg.png ./IMG//K006289_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006289_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6141554 12.90 % 4487200 11.25 % 107732 19.09 % 30163 8.82 %
Intermediate (0.3-0.7) 7307790 15.35 % 4903978 12.30 % 124406 22.04 % 55398 16.20 %
Methylated (0.7-1) 34158011 71.75 % 30490508 76.45 % 332266 58.87 % 256503 74.99 %
Median Methylation 0.850 0.870 0.780 0.860