/EXTERNAL BLUEPRINT/K006305_17_lane_gembs/S00BS4.Bisulfite-Seq.DNA_Methylation.EGAX00001208459_17

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SAMPLE K006305_17_lane_gembs LANE S00BS4.Bisulfite-Seq.DNA_Methylation.EGAX00001208459_17

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1097261246 100.00 % 548630623 100.00 % 548630623 100.00 %
General Reads 1052628395 95.93 % 527562198 96.16 % 525066197 95.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15607261 1.42 % 7823910 1.43 % 7783351 1.42 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 29025590 2.65 % 13244515 2.41 % 15781075 2.88 %
Bisulfite_reads C2T 563456425 51.35 % 282391301 51.47 % 281065124 51.23 %
Bisulfite_reads G2A 504779231 46.00 % 252994807 46.11 % 251784424 45.89 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 404245043
Average Unique 73.68 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40230327172 35.97 % 16277772610 29.11 % 23952554562 42.83 %
Base Counts Overall C 15265963481 13.65 % 929396202 1.66 % 14336567279 25.64 %
Base Counts Overall G 15571620847 13.92 % 14664091940 26.22 % 907528907 1.62 %
Base Counts Overall T 39670416510 35.47 % 23500684117 42.02 % 16169732393 28.91 %
Base Counts Overall N 1110933224 0.99 % 552685748 0.99 % 558247476 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988010295761874
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 506465119



Mapping Quality

Mapping Quality Histogram
S00BS4.Bisulfite-Seq.DNA_Methylation.EGAX00001208459_17.mapq.png



Read Length

Read Length Reads
100 35692929
101 512937694
100 35692929
101 512937694



Insert Size Plot

Insert Size Histogram
S00BS4.Bisulfite-Seq.DNA_Methylation.EGAX00001208459_17.isize.png