/EXTERNAL BLUEPRINT/mapping_coverage/K006305_17_lane_gembs
BACK
SAMPLE K006305_17_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1005480118 |
100% |
97193540276 |
100% |
| Mapped |
992153124 |
98.67 % |
95848311488 |
98.62 % |
| Passed |
706558455 |
70.27 % |
67019171794 |
68.95 % |
| NotPassed |
285594669 |
28.40 % |
28829139694 |
29.66 % |
| |
|
|
|
|
| LowMAPQ |
214410410 |
21.32 % |
21641469288 |
22.27 % |
| MateUnmapped |
13326994 |
1.33 % |
1345228788 |
1.38 % |
| Duplicate |
47381782 |
4.71 % |
4785137107 |
4.92 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
29494 |
0.00 % |
2977150 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23772953 |
2.36 % |
2399553119 |
2.47 % |
| Unmapped |
13326994 |
1.33 % |
1345228788 |
1.38 % |
Base Level Counts
| Bases |
# |
% |
| Total |
71289026629 |
100% |
| Passed |
62369369370 |
87.49 % |
| Trimmed |
3317592078 |
4.65 % |
| Clipped |
98632913 |
0.14 % |
| Overlapping |
4171221922 |
5.85 % |
| LowQuality |
1332210346 |
1.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |