/EXTERNAL BLUEPRINT/methylation/K006305_17_lane_gembs

BACK

SAMPLE K006305_17_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26563278 19587218 73.74 %
NonRefCpG 354726 146197 41.21 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006305_17_lane_gembs_coverage_refCpG.png ./IMG//K006305_17_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006305_17_lane_gembs_coverage_nonRefCpG.png ./IMG//K006305_17_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006305_17_lane_gembs_quality_refcpg.png ./IMG//K006305_17_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006305_17_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6196320 13.13 % 4316463 11.22 % 129045 21.60 % 31725 9.57 %
Intermediate (0.3-0.7) 7639502 16.18 % 4880905 12.69 % 137835 23.07 % 54990 16.59 %
Methylated (0.7-1) 33370944 70.69 % 29272631 76.09 % 330623 55.33 % 244664 73.83 %
Median Methylation 0.850 0.880 0.750 0.860