/EXTERNAL BLUEPRINT/K006354_12_lane_gembs/UMCG00017.Bisulfite-Seq.DNA_Methylation.EGAX00001290293_12

BACK

SAMPLE K006354_12_lane_gembs LANE UMCG00017.Bisulfite-Seq.DNA_Methylation.EGAX00001290293_12

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 991039742 100.00 % 495519871 100.00 % 495519871 100.00 %
General Reads 950609874 95.92 % 477138747 96.29 % 473471127 95.55 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17242563 1.74 % 8645547 1.74 % 8597016 1.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23187305 2.34 % 9735577 1.96 % 13451728 2.71 %
Bisulfite_reads C2T 506039784 51.06 % 253985942 51.26 % 252053842 50.87 %
Bisulfite_reads G2A 461812653 46.60 % 231798352 46.78 % 230014301 46.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 392968512
Average Unique 79.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36362202840 35.97 % 14181570804 28.06 % 22180632036 43.88 %
Base Counts Overall C 13661703404 13.51 % 736811336 1.46 % 12924892068 25.57 %
Base Counts Overall G 13882601466 13.73 % 13172216323 26.06 % 710385143 1.41 %
Base Counts Overall T 36154153882 35.77 % 21949732659 43.43 % 14204421223 28.10 %
Base Counts Overall N 1025392092 1.01 % 502695720 0.99 % 522696372 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991507920412181
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 469723791



Mapping Quality

Mapping Quality Histogram
UMCG00017.Bisulfite-Seq.DNA_Methylation.EGAX00001290293_12.mapq.png



Read Length

Read Length Reads
101 495519871
101 495519871



Insert Size Plot

Insert Size Histogram
UMCG00017.Bisulfite-Seq.DNA_Methylation.EGAX00001290293_12.isize.png