/EXTERNAL BLUEPRINT/mapping_coverage/K006354_12_lane_gembs
BACK
SAMPLE K006354_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
942484663 |
100% |
84833318799 |
100% |
| Mapped |
932895940 |
98.98 % |
83864857776 |
98.86 % |
| Passed |
760268632 |
80.67 % |
66429499668 |
78.31 % |
| NotPassed |
172627308 |
18.32 % |
17435358108 |
20.55 % |
| |
|
|
|
|
| LowMAPQ |
151178746 |
16.04 % |
15269053346 |
18.00 % |
| MateUnmapped |
9588723 |
1.02 % |
968461023 |
1.14 % |
| Duplicate |
8132319 |
0.86 % |
821364219 |
0.97 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
11578 |
0.00 % |
1169378 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13304647 |
1.41 % |
1343769347 |
1.58 % |
| Unmapped |
9588723 |
1.02 % |
968461023 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76781969419 |
100% |
| Passed |
62463816358 |
81.35 % |
| Trimmed |
3284951898 |
4.28 % |
| Clipped |
89640867 |
0.12 % |
| Overlapping |
10262828884 |
13.37 % |
| LowQuality |
680731412 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |