/EXTERNAL BLUEPRINT/methylation/K006354_12_lane_gembs

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SAMPLE K006354_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26560442 20037998 75.44 %
NonRefCpG 322437 150202 46.58 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006354_12_lane_gembs_coverage_refCpG.png ./IMG//K006354_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006354_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006354_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006354_12_lane_gembs_quality_refcpg.png ./IMG//K006354_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006354_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6916436 14.63 % 4821631 12.27 % 108428 19.82 % 32332 9.78 %
Intermediate (0.3-0.7) 7189023 15.20 % 4688582 11.93 % 118223 21.61 % 50674 15.32 %
Methylated (0.7-1) 33185393 70.17 % 29798285 75.81 % 320550 58.58 % 247756 74.90 %
Median Methylation 0.870 0.890 0.790 0.880