/EXTERNAL BLUEPRINT/K006283_14_lane_gembs

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SAMPLE K006283_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1078064308 100.00 % 539032154 100.00 % 539032154 100.00 %
General Reads 1026283427 95.20 % 514450058 95.44 % 511833369 94.95 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15122897 1.40 % 7576270 1.41 % 7546627 1.40 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36657984 3.40 % 17005826 3.15 % 19652158 3.65 %
Bisulfite_reads C2T 552490578 51.25 % 276996472 51.39 % 275494106 51.11 %
Bisulfite_reads G2A 488915746 45.35 % 245029856 45.46 % 243885890 45.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 411662606
Average Unique 76.37 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38633683742 35.13 % 15473833404 28.14 % 23159850338 42.12 %
Base Counts Overall C 15879349380 14.44 % 1326553095 2.41 % 14552796285 26.47 %
Base Counts Overall G 15940210915 14.50 % 14652591516 26.65 % 1287619399 2.34 %
Base Counts Overall T 38395404524 34.92 % 22980653270 41.80 % 15414751254 28.04 %
Base Counts Overall N 1113910855 1.01 % 547648423 1.00 % 566262432 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9799035369368481
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 503754193



Mapping Quality

Mapping Quality Histogram
K006283_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006283_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C005VG.Bisulfite-Seq.DNA_Methylation.EGAX00001147725_14