/EXTERNAL BLUEPRINT/mapping_coverage/K006283_14_lane_gembs
BACK
SAMPLE K006283_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
988843212 |
100% |
88234582705 |
100% |
| Mapped |
978785836 |
98.98 % |
87218787729 |
98.85 % |
| Passed |
742059996 |
75.04 % |
63309477889 |
71.75 % |
| NotPassed |
236725840 |
23.94 % |
23909309840 |
27.10 % |
| |
|
|
|
|
| LowMAPQ |
183345038 |
18.54 % |
18517848838 |
20.99 % |
| MateUnmapped |
10057376 |
1.02 % |
1015794976 |
1.15 % |
| Duplicate |
37489269 |
3.79 % |
3786416169 |
4.29 % |
| BadOrientation |
22 |
0.00 % |
2222 |
0.00 % |
| LargeInsertSize |
20014 |
0.00 % |
2021414 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15871497 |
1.61 % |
1603021197 |
1.82 % |
| Unmapped |
10057376 |
1.02 % |
1015794976 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74941289566 |
100% |
| Passed |
59408090991 |
79.27 % |
| Trimmed |
3123987611 |
4.17 % |
| Clipped |
79379771 |
0.11 % |
| Overlapping |
11552431906 |
15.42 % |
| LowQuality |
777399287 |
1.04 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |