/EXTERNAL BLUEPRINT/methylation/K006283_14_lane_gembs

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SAMPLE K006283_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26624165 19301787 72.50 %
NonRefCpG 371830 143026 38.47 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006283_14_lane_gembs_coverage_refCpG.png ./IMG//K006283_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006283_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006283_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006283_14_lane_gembs_quality_refcpg.png ./IMG//K006283_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006283_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5999733 12.48 % 4098045 10.63 % 140942 21.84 % 29902 8.69 %
Intermediate (0.3-0.7) 7972447 16.58 % 5072341 13.16 % 152420 23.62 % 61643 17.92 %
Methylated (0.7-1) 34106738 70.94 % 29386564 76.22 % 351885 54.53 % 252367 73.38 %
Median Methylation 0.850 0.880 0.740 0.860