{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 28652942, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 28231590, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.53, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 32467920, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32164608, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.07, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 22728105, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 4849729, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.21338
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 25482309, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 7324182, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.287422
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 22727208, 
            "distinct_read_pairs": 18082133, 
            "one_read_pair": 14332763, 
            "two_read_pair": 3032808, 
            "NRF": 0.795616, 
            "PBC1": 0.792648, 
            "PBC2": 4.725905
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 25474265, 
            "distinct_read_pairs": 18313277, 
            "one_read_pair": 13024757, 
            "two_read_pair": 3890155, 
            "NRF": 0.718893, 
            "PBC1": 0.711219, 
            "PBC2": 3.348133
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 17878376, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 17878376, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 18158127, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 18158127, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 20543, 
        "Np": 0, 
        "N_opt": 20543, 
        "N_consv": 20543, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 180, 
            "corr_est_frag_len": 0.169233564633555, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1647047, 
            "argmin_corr": 1500, 
            "min_corr": 0.1452606, 
            "NSC": 1.165034, 
            "RSC": 1.232918
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.131928664749
        }, 
        "rep1-pr1": {
            "FRiP": 0.130472035785
        }, 
        "rep1-pr2": {
            "FRiP": 0.130244615797
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.117022862432
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.249742451008, 
            "auc": 0.487138590173, 
            "ch_div": 0.182238580974, 
            "elbow_pt": 6.14464327695e-51, 
            "jsd": 0.557557969827, 
            "syn_auc": 0.50913616969, 
            "syn_elbow_pt": 0.157013465661, 
            "syn_jsd": 0.284067898025
        }
    ]
}
