/EXTERNAL BLUEPRINT/K006324_15_lane_gembs

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SAMPLE K006324_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1231785602 100.00 % 615892801 100.00 % 615892801 100.00 %
General Reads 1193663846 96.91 % 598323903 97.15 % 595339943 96.66 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 14640807 1.19 % 7331709 1.19 % 7309098 1.19 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23480949 1.91 % 10237189 1.66 % 13243760 2.15 %
Bisulfite_reads C2T 639503151 51.92 % 320606969 52.06 % 318896182 51.78 %
Bisulfite_reads G2A 568801502 46.18 % 285048643 46.28 % 283752859 46.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 464774745
Average Unique 75.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43555770660 34.67 % 17719373542 28.21 % 25836397118 41.13 %
Base Counts Overall C 18736394616 14.91 % 948148818 1.51 % 17788245798 28.32 %
Base Counts Overall G 18850549212 15.00 % 17911367226 28.51 % 939181986 1.50 %
Base Counts Overall T 43236565096 34.41 % 25621929350 40.79 % 17614635746 28.04 %
Base Counts Overall N 1262851820 1.01 % 620246766 0.99 % 642605054 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992301371420477
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 574499316



Mapping Quality

Mapping Quality Histogram
K006324_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006324_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S0018A.Bisulfite-Seq.DNA_Methylation.EGAX00001236255_15