/EXTERNAL BLUEPRINT/methylation/K006324_15_lane_gembs

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SAMPLE K006324_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26169683 18395634 70.29 %
NonRefCpG 361303 133364 36.91 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006324_15_lane_gembs_coverage_refCpG.png ./IMG//K006324_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006324_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006324_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006324_15_lane_gembs_quality_refcpg.png ./IMG//K006324_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006324_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5870501 13.35 % 4072581 11.78 % 114082 20.15 % 25403 8.90 %
Intermediate (0.3-0.7) 6889018 15.67 % 4052905 11.72 % 134721 23.80 % 45372 15.90 %
Methylated (0.7-1) 31206091 70.98 % 26450613 76.50 % 317363 56.05 % 214547 75.19 %
Median Methylation 0.850 0.880 0.760 0.870