/EXTERNAL BLUEPRINT/K006307_K006317_21_lane_gembs

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SAMPLE K006307_K006317_21_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1181128372 100.00 % 590564186 100.00 % 590564186 100.00 %
General Reads 1122142816 95.01 % 561713713 95.11 % 560429103 94.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 27374893 2.32 % 13711844 2.32 % 13663049 2.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31610663 2.68 % 15138629 2.56 % 16472034 2.79 %
Bisulfite_reads C2T 621746731 52.64 % 311385058 52.73 % 310361673 52.55 %
Bisulfite_reads G2A 527770978 44.68 % 264040499 44.71 % 263730479 44.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 426926066
Average Unique 72.29 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41238563866 34.25 % 17259546728 28.67 % 23979017138 39.83 %
Base Counts Overall C 18478033189 15.35 % 1081843379 1.80 % 17396189810 28.90 %
Base Counts Overall G 18671927527 15.51 % 17538179506 29.13 % 1133748021 1.88 %
Base Counts Overall T 40820785618 33.90 % 23725141667 39.41 % 17095643951 28.40 %
Base Counts Overall N 1194511994 0.99 % 597199817 0.99 % 597312177 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990581435101648
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 546884602



Mapping Quality

Mapping Quality Histogram
K006307_K006317_21_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006307_K006317_21_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208471_20
S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208461.cnag-blueprint-17_C3PFRACXX