/EXTERNAL BLUEPRINT/K006307_K006317_21_lane_gembs/S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208461.cnag-blueprint-17_C3PFRACXX

BACK

SAMPLE K006307_K006317_21_lane_gembs LANE S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208461.cnag-blueprint-17_C3PFRACXX

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	58112856	100.00 %	29056428	100.00 %	29056428	100.00 %
General Reads	52239076	89.89 %	25890019	89.10 %	26349057	90.68 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1168132	2.01 %	585038	2.01 %	583094	2.01 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	4705648	8.10 %	2581371	8.88 %	2124277	7.31 %
Bisulfite_reads C2T	28944763	49.81 %	14369830	49.45 %	14574933	50.16 %
Bisulfite_reads G2A	24462445	42.09 %	12105227	41.66 %	12357218	42.53 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	18991375
Average Unique	65.36 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	2089175626	35.25 %	884010739	29.83 %	1205164887	40.66 %
Base Counts Overall C	877452610	14.80 %	84951606	2.87 %	792501004	26.74 %
Base Counts Overall G	912440445	15.39 %	816412377	27.55 %	96028068	3.24 %
Base Counts Overall T	1989983897	33.57 %	1149194504	38.77 %	840789393	28.37 %
Base Counts Overall N	58458734	0.99 %	29186430	0.98 %	29272304	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9991620813307135
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	25018741

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	29056428
101	29056428

Insert Size Plot

Insert Size Histogram