/EXTERNAL BLUEPRINT/K006307_K006317_21_lane_gembs/S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208471_20

BACK

SAMPLE K006307_K006317_21_lane_gembs LANE S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208471_20

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1123015516 100.00 % 561507758 100.00 % 561507758 100.00 %
General Reads 1069903740 95.27 % 535823694 95.43 % 534080046 95.12 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 26206761 2.33 % 13126806 2.34 % 13079955 2.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26905015 2.40 % 12557258 2.24 % 14347757 2.56 %
Bisulfite_reads C2T 592801968 52.79 % 297015228 52.90 % 295786740 52.68 %
Bisulfite_reads G2A 503308533 44.82 % 251935272 44.87 % 251373261 44.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 407934691
Average Unique 72.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39149388240 34.20 % 16375535989 28.61 % 22773852251 39.79 %
Base Counts Overall C 17600580579 15.37 % 996891773 1.74 % 16603688806 29.01 %
Base Counts Overall G 17759487082 15.51 % 16721767129 29.21 % 1037719953 1.81 %
Base Counts Overall T 38830801721 33.92 % 22575947163 39.44 % 16254854558 28.40 %
Base Counts Overall N 1136053260 0.99 % 568013387 0.99 % 568039873 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990535745083614
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 521865861



Mapping Quality

Mapping Quality Histogram
S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208471_20.mapq.png



Read Length

Read Length Reads
101 525871883
100 35635875
101 525871883
100 35635875



Insert Size Plot

Insert Size Histogram
S00C2F.Bisulfite-Seq.DNA_Methylation.EGAX00001208471_20.isize.png