/EXTERNAL BLUEPRINT/mapping_coverage/K006307_K006317_21_lane_gembs
BACK
SAMPLE K006307_K006317_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1092273334 |
100% |
96056106986 |
100% |
| Mapped |
1079617002 |
98.84 % |
94778568977 |
98.67 % |
| Passed |
777415806 |
71.17 % |
64273090059 |
66.91 % |
| NotPassed |
302201196 |
27.67 % |
30505478918 |
31.76 % |
| |
|
|
|
|
| LowMAPQ |
247251142 |
22.64 % |
24957413200 |
25.98 % |
| MateUnmapped |
12656332 |
1.16 % |
1277538009 |
1.33 % |
| Duplicate |
29979038 |
2.74 % |
3027489167 |
3.15 % |
| BadOrientation |
84 |
0.00 % |
8480 |
0.00 % |
| LargeInsertSize |
71422 |
0.01 % |
7209396 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24899510 |
2.28 % |
2513358675 |
2.62 % |
| Unmapped |
12656332 |
1.16 % |
1277538009 |
1.33 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78451661699 |
100% |
| Passed |
60374948971 |
76.96 % |
| Trimmed |
3297115290 |
4.20 % |
| Clipped |
70422158 |
0.09 % |
| Overlapping |
14108149482 |
17.98 % |
| LowQuality |
601025798 |
0.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |