/EXTERNAL BLUEPRINT/methylation/K006307_K006317_21_lane_gembs
BACK
SAMPLE K006307_K006317_21_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25899603 |
17740220 |
68.50 % |
| NonRefCpG |
356435 |
131324 |
36.84 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5346455 |
12.55 % |
3636677 |
11.12 % |
99436 |
18.24 % |
20812 |
7.76 % |
| Intermediate (0.3-0.7) |
6317349 |
14.83 % |
3472530 |
10.62 % |
126338 |
23.18 % |
37964 |
14.15 % |
| Methylated (0.7-1) |
30936226 |
72.62 % |
25591903 |
78.26 % |
319366 |
58.58 % |
209532 |
78.09 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.900 |
|
0.780 |
|
0.890 |
|