/EXTERNAL BLUEPRINT/mapping_coverage/K006272_11_lane_gembs
BACK
SAMPLE K006272_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1206576922 |
100% |
108914744722 |
100% |
| Mapped |
1194778571 |
99.02 % |
107723111271 |
98.91 % |
| Passed |
961303991 |
79.67 % |
84142178691 |
77.26 % |
| NotPassed |
233474580 |
19.35 % |
23580932580 |
21.65 % |
| |
|
|
|
|
| LowMAPQ |
197945624 |
16.41 % |
19992508024 |
18.36 % |
| MateUnmapped |
11798351 |
0.98 % |
1191633451 |
1.09 % |
| Duplicate |
16822560 |
1.39 % |
1699078560 |
1.56 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
13930 |
0.00 % |
1406930 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18692450 |
1.55 % |
1887937450 |
1.73 % |
| Unmapped |
11798351 |
0.98 % |
1191633451 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
97086216266 |
100% |
| Passed |
78650383213 |
81.01 % |
| Trimmed |
4109170999 |
4.23 % |
| Clipped |
313002312 |
0.32 % |
| Overlapping |
12631035263 |
13.01 % |
| LowQuality |
1382624479 |
1.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |