/EXTERNAL BLUEPRINT/K006259_19_lane_gembs

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SAMPLE K006259_19_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2119479604 100.00 % 1059739802 100.00 % 1059739802 100.00 %
General Reads 2052627308 96.85 % 1029011847 97.10 % 1023615461 96.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16313077 0.77 % 8173058 0.77 % 8140019 0.77 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 50539219 2.38 % 22554897 2.13 % 27984322 2.64 %
Bisulfite_reads C2T 1080483622 50.98 % 541727227 51.12 % 538756395 50.84 %
Bisulfite_reads G2A 988456763 46.64 % 495457678 46.75 % 492999085 46.52 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 829864409
Average Unique 78.31 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 79184452550 36.63 % 30538064656 28.25 % 48646387894 45.00 %
Base Counts Overall C 27682566126 12.80 % 1466460381 1.36 % 26216105745 24.25 %
Base Counts Overall G 28092005044 12.99 % 26701349899 24.70 % 1390655145 1.29 %
Base Counts Overall T 78963809875 36.53 % 48257242125 44.64 % 30706567750 28.41 %
Base Counts Overall N 2264086013 1.05 % 1130342743 1.05 % 1133743270 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985608492710286
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 999899225



Mapping Quality

Mapping Quality Histogram
K006259_19_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006259_19_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C000S5.Bisulfite-Seq.DNA_Methylation.EGAX00001086967_19