/EXTERNAL BLUEPRINT/mapping_coverage/K006259_19_lane_gembs
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SAMPLE K006259_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2004618263 |
100% |
181442436984 |
100% |
| Mapped |
1981549257 |
98.85 % |
179112467378 |
98.72 % |
| Passed |
1566537078 |
78.15 % |
137196237299 |
75.61 % |
| NotPassed |
415012179 |
20.70 % |
41916230079 |
23.10 % |
| |
|
|
|
|
| LowMAPQ |
330256678 |
16.47 % |
33355924478 |
18.38 % |
| MateUnmapped |
23069006 |
1.15 % |
2329969606 |
1.28 % |
| Duplicate |
48034735 |
2.40 % |
4851508235 |
2.67 % |
| BadOrientation |
26 |
0.00 % |
2626 |
0.00 % |
| LargeInsertSize |
24238 |
0.00 % |
2448038 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
36696502 |
1.83 % |
3706346702 |
2.04 % |
| Unmapped |
23069006 |
1.15 % |
2329969606 |
1.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
158213091654 |
100% |
| Passed |
127282456954 |
80.45 % |
| Trimmed |
6746574574 |
4.26 % |
| Clipped |
299336629 |
0.19 % |
| Overlapping |
20717517726 |
13.09 % |
| LowQuality |
3167205771 |
2.00 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |