/EXTERNAL BLUEPRINT/methylation/K006259_19_lane_gembs

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SAMPLE K006259_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27016693 23824660 88.18 %
NonRefCpG 302653 188498 62.28 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006259_19_lane_gembs_coverage_refCpG.png ./IMG//K006259_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006259_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006259_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006259_19_lane_gembs_quality_refcpg.png ./IMG//K006259_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006259_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6246385 12.18 % 5419528 11.50 % 79266 14.43 % 29586 7.32 %
Intermediate (0.3-0.7) 5722048 11.16 % 4588081 9.73 % 94849 17.27 % 52767 13.05 %
Methylated (0.7-1) 39314209 76.66 % 37134238 78.77 % 375064 68.30 % 322082 79.64 %
Median Methylation 0.880 0.890 0.850 0.890