/EXTERNAL BLUEPRINT/K006297_K006298_14_lane_gembs/S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195939_7

BACK

SAMPLE K006297_K006298_14_lane_gembs LANE S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195939_7

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 600777604 100.00 % 300388802 100.00 % 300388802 100.00 %
General Reads 572634132 95.32 % 287164040 95.60 % 285470092 95.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9852963 1.64 % 4938282 1.64 % 4914681 1.64 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18290509 3.04 % 8286480 2.76 % 10004029 3.33 %
Bisulfite_reads C2T 305644840 50.87 % 153276519 51.03 % 152368321 50.72 %
Bisulfite_reads G2A 276842255 46.08 % 138825803 46.22 % 138016452 45.95 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 233868236
Average Unique 77.86 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 21720514969 35.45 % 8705194067 28.41 % 13015320902 42.48 %
Base Counts Overall C 8653449998 14.12 % 541663313 1.77 % 8111786685 26.47 %
Base Counts Overall G 8697014027 14.19 % 8180250259 26.70 % 516763768 1.69 %
Base Counts Overall T 21572212356 35.20 % 12900643821 42.10 % 8671568535 28.30 %
Base Counts Overall N 636124258 1.04 % 311906344 1.02 % 324217914 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9979957407913513
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 282075986



Mapping Quality

Mapping Quality Histogram
S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195939_7.mapq.png



Read Length

Read Length Reads
101 300388802
101 300388802



Insert Size Plot

Insert Size Histogram
S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195939_7.isize.png