/EXTERNAL BLUEPRINT/K006297_K006298_14_lane_gembs/S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195940_7

BACK

SAMPLE K006297_K006298_14_lane_gembs LANE S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195940_7

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 536756938 100.00 % 268378469 100.00 % 268378469 100.00 %
General Reads 511960653 95.38 % 257014944 95.77 % 254945709 94.99 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8404576 1.57 % 4214775 1.57 % 4189801 1.56 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16391709 3.05 % 7148750 2.66 % 9242959 3.44 %
Bisulfite_reads C2T 272820323 50.83 % 136960197 51.03 % 135860126 50.62 %
Bisulfite_reads G2A 247544906 46.12 % 124269522 46.30 % 123275384 45.93 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 208848585
Average Unique 77.82 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 19495995447 35.61 % 7821197436 28.57 % 11674798011 42.65 %
Base Counts Overall C 7616959342 13.91 % 465825142 1.70 % 7151134200 26.12 %
Base Counts Overall G 7708833706 14.08 % 7260563489 26.52 % 448270217 1.64 %
Base Counts Overall T 19367488543 35.37 % 11554482259 42.21 % 7813006284 28.54 %
Base Counts Overall N 559930638 1.02 % 272535512 1.00 % 287395126 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9984749350880853
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 251614091



Mapping Quality

Mapping Quality Histogram
S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195940_7.mapq.png



Read Length

Read Length Reads
101 268378469
101 268378469



Insert Size Plot

Insert Size Histogram
S001JP.Bisulfite-Seq.DNA_Methylation.EGAX00001195940_7.isize.png