/EXTERNAL BLUEPRINT/mapping_coverage/K006297_K006298_14_lane_gembs
BACK
SAMPLE K006297_K006298_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1075756010 |
100% |
96325681331 |
100% |
| Mapped |
1064973126 |
99.00 % |
95236610047 |
98.87 % |
| Passed |
858817204 |
79.83 % |
74414861925 |
77.25 % |
| NotPassed |
206155922 |
19.16 % |
20821748122 |
21.62 % |
| |
|
|
|
|
| LowMAPQ |
180941612 |
16.82 % |
18275102812 |
18.97 % |
| MateUnmapped |
10782884 |
1.00 % |
1089071284 |
1.13 % |
| Duplicate |
8848697 |
0.82 % |
893718397 |
0.93 % |
| BadOrientation |
26 |
0.00 % |
2626 |
0.00 % |
| LargeInsertSize |
16540 |
0.00 % |
1670540 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16349047 |
1.52 % |
1651253747 |
1.71 % |
| Unmapped |
10782884 |
1.00 % |
1089071284 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86735785857 |
100% |
| Passed |
69672484156 |
80.33 % |
| Trimmed |
3683788283 |
4.25 % |
| Clipped |
108194642 |
0.12 % |
| Overlapping |
12212729290 |
14.08 % |
| LowQuality |
1058589486 |
1.22 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |