/EXTERNAL BLUEPRINT/methylation/K006297_K006298_14_lane_gembs
BACK
SAMPLE K006297_K006298_14_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26469193 |
20349115 |
76.88 % |
| NonRefCpG |
326409 |
154069 |
47.20 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5479245 |
11.91 % |
3942358 |
10.26 % |
88499 |
16.54 % |
23445 |
7.33 % |
| Intermediate (0.3-0.7) |
6237249 |
13.56 % |
4059804 |
10.57 % |
112233 |
20.98 % |
44224 |
13.82 % |
| Methylated (0.7-1) |
34273297 |
74.52 % |
30408788 |
79.17 % |
334340 |
62.48 % |
252321 |
78.85 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.880 |
|
0.900 |
|
0.820 |
|
0.890 |
|