/EXTERNAL BLUEPRINT/K006286_14_lane_gembs/S001S7.Bisulfite-Seq.DNA_Methylation.EGAX00001147728_14

BACK

SAMPLE K006286_14_lane_gembs LANE S001S7.Bisulfite-Seq.DNA_Methylation.EGAX00001147728_14

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1060895880 100.00 % 530447940 100.00 % 530447940 100.00 %
General Reads 1017991360 95.96 % 510168915 96.18 % 507822445 95.73 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12425108 1.17 % 6223813 1.17 % 6201295 1.17 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30479412 2.87 % 14055212 2.65 % 16424200 3.10 %
Bisulfite_reads C2T 537615577 50.68 % 269431886 50.79 % 268183691 50.56 %
Bisulfite_reads G2A 492800891 46.45 % 246960842 46.56 % 245840049 46.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 425455251
Average Unique 80.21 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38738391702 35.80 % 15118868448 27.94 % 23619523254 43.65 %
Base Counts Overall C 14879042622 13.75 % 1348996061 2.49 % 13530046561 25.01 %
Base Counts Overall G 14955419981 13.82 % 13651039870 25.23 % 1304380111 2.41 %
Base Counts Overall T 38542144180 35.62 % 23447996338 43.34 % 15094147842 27.90 %
Base Counts Overall N 1096381275 1.01 % 538789163 1.00 % 557592112 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9692226353809316
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 503583466



Mapping Quality

Mapping Quality Histogram
S001S7.Bisulfite-Seq.DNA_Methylation.EGAX00001147728_14.mapq.png



Read Length

Read Length Reads
101 530447940
101 530447940



Insert Size Plot

Insert Size Histogram
S001S7.Bisulfite-Seq.DNA_Methylation.EGAX00001147728_14.isize.png