/EXTERNAL BLUEPRINT/mapping_coverage/K006286_14_lane_gembs
BACK
SAMPLE K006286_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
994984655 |
100% |
88843384393 |
100% |
| Mapped |
986618144 |
99.16 % |
87998366782 |
99.05 % |
| Passed |
800603735 |
80.46 % |
69210911473 |
77.90 % |
| NotPassed |
186014409 |
18.70 % |
18787455309 |
21.15 % |
| |
|
|
|
|
| LowMAPQ |
152335908 |
15.31 % |
15385926708 |
17.32 % |
| MateUnmapped |
8366511 |
0.84 % |
845017611 |
0.95 % |
| Duplicate |
23023598 |
2.31 % |
2325383398 |
2.62 % |
| BadOrientation |
24 |
0.00 % |
2424 |
0.00 % |
| LargeInsertSize |
11684 |
0.00 % |
1180084 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10643195 |
1.07 % |
1074962695 |
1.21 % |
| Unmapped |
8366511 |
0.84 % |
845017611 |
0.95 % |
Base Level Counts
| Bases |
# |
% |
| Total |
80855489905 |
100% |
| Passed |
64940810689 |
80.32 % |
| Trimmed |
3406119264 |
4.21 % |
| Clipped |
81134780 |
0.10 % |
| Overlapping |
11563443652 |
14.30 % |
| LowQuality |
863981520 |
1.07 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |