/EXTERNAL BLUEPRINT/methylation/K006286_14_lane_gembs

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SAMPLE K006286_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26728136 21164360 79.18 %
NonRefCpG 347798 162864 46.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006286_14_lane_gembs_coverage_refCpG.png ./IMG//K006286_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006286_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006286_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006286_14_lane_gembs_quality_refcpg.png ./IMG//K006286_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006286_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5940865 11.85 % 4400725 10.24 % 125594 20.00 % 31725 8.16 %
Intermediate (0.3-0.7) 7867249 15.69 % 5624686 13.08 % 136702 21.76 % 67170 17.27 %
Methylated (0.7-1) 36334700 72.46 % 32965242 76.68 % 365823 58.24 % 290084 74.58 %
Median Methylation 0.860 0.880 0.780 0.860