/EXTERNAL BLUEPRINT/K006308_K006318_18_lane_gembs/S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001208462_17

BACK

SAMPLE K006308_K006318_18_lane_gembs LANE S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001208462_17

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1257206520 100.00 % 628603260 100.00 % 628603260 100.00 %
General Reads 1144510353 91.04 % 569062179 90.53 % 575448174 91.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22389651 1.78 % 11216868 1.78 % 11172783 1.78 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 90306516 7.18 % 48324213 7.69 % 41982303 6.68 %
Bisulfite_reads C2T 621988891 49.47 % 309552861 49.24 % 312436030 49.70 %
Bisulfite_reads G2A 544911113 43.34 % 270726186 43.07 % 274184927 43.62 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 406622636
Average Unique 64.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44763902630 34.92 % 18856556493 29.42 % 25907346137 40.42 %
Base Counts Overall C 19135598720 14.93 % 1754380814 2.74 % 17381217906 27.12 %
Base Counts Overall G 19776923334 15.43 % 17815841274 27.80 % 1961082060 3.06 %
Base Counts Overall T 43239521927 33.73 % 25034562579 39.06 % 18204959348 28.40 %
Base Counts Overall N 1272926199 0.99 % 633095245 0.99 % 639830954 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9986244503956258
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 538858437



Mapping Quality

Mapping Quality Histogram
S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001208462_17.mapq.png



Read Length

Read Length Reads
101 605507145
100 23096115
101 605507145
100 23096115



Insert Size Plot

Insert Size Histogram
S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001208462_17.isize.png