/EXTERNAL BLUEPRINT/K006308_K006318_18_lane_gembs/S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001208472.cnag-blueprint-17_C3R02ACXX

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SAMPLE K006308_K006318_18_lane_gembs LANE S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001208472.cnag-blueprint-17_C3R02ACXX

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	3233160	100.00 %	1616580	100.00 %	1616580	100.00 %
General Reads	2720187	84.13 %	1335357	82.60 %	1384830	85.66 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	36563	1.13 %	18290	1.13 %	18273	1.13 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	476410	14.74 %	262933	16.26 %	213477	13.21 %
Bisulfite_reads C2T	1470784	45.49 %	724359	44.81 %	746425	46.17 %
Bisulfite_reads G2A	1285966	39.77 %	629288	38.93 %	656678	40.62 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	899475
Average Unique	55.64 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	107752454	32.67 %	48390702	29.35 %	59361752	36.00 %
Base Counts Overall C	57274816	17.37 %	11405175	6.92 %	45869641	27.82 %
Base Counts Overall G	60797578	18.44 %	47196573	28.62 %	13601005	8.25 %
Base Counts Overall T	100712746	30.54 %	56273438	34.13 %	44439308	26.95 %
Base Counts Overall N	3244726	0.98 %	1625272	0.99 %	1619454	0.98 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9983293962240939
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	1231618

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	1616580
101	1616580

Insert Size Plot

Insert Size Histogram