/EXTERNAL BLUEPRINT/mapping_coverage/K006308_K006318_18_lane_gembs
BACK
SAMPLE K006308_K006318_18_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1072286473 |
100% |
103034637389 |
100% |
| Mapped |
1045811914 |
97.53 % |
100361609215 |
97.41 % |
| Passed |
652510203 |
60.85 % |
60650307744 |
58.86 % |
| NotPassed |
393301711 |
36.68 % |
39711301471 |
38.54 % |
| |
|
|
|
|
| LowMAPQ |
283502308 |
26.44 % |
28623141372 |
27.78 % |
| MateUnmapped |
26474559 |
2.47 % |
2673028174 |
2.59 % |
| Duplicate |
75495592 |
7.04 % |
7624727923 |
7.40 % |
| BadOrientation |
88 |
0.00 % |
8884 |
0.00 % |
| LargeInsertSize |
107686 |
0.01 % |
10872744 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
34196037 |
3.19 % |
3452550548 |
3.35 % |
| Unmapped |
26474559 |
2.47 % |
2673028174 |
2.59 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65843046464 |
100% |
| Passed |
56481617985 |
85.78 % |
| Trimmed |
3014513605 |
4.58 % |
| Clipped |
99906188 |
0.15 % |
| Overlapping |
5092832532 |
7.73 % |
| LowQuality |
1154176154 |
1.75 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |