/EXTERNAL BLUEPRINT/methylation/K006266_8_lane_gembs

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SAMPLE K006266_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27031859 24268902 89.78 %
NonRefCpG 306291 196456 64.14 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006266_8_lane_gembs_coverage_refCpG.png ./IMG//K006266_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006266_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006266_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006266_8_lane_gembs_quality_refcpg.png ./IMG//K006266_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006266_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6147963 11.91 % 5376191 11.17 % 82395 14.70 % 31058 7.35 %
Intermediate (0.3-0.7) 5655093 10.95 % 4675081 9.72 % 94150 16.80 % 54792 12.96 %
Methylated (0.7-1) 39826365 77.14 % 38069957 79.11 % 383988 68.50 % 336870 79.69 %
Median Methylation 0.880 0.880 0.850 0.880