/EXTERNAL BLUEPRINT/K006294_9_lane_gembs

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SAMPLE K006294_9_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1246419916 100.00 % 623209958 100.00 % 623209958 100.00 %
General Reads 1200428950 96.31 % 602159966 96.62 % 598268984 96.00 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24436505 1.96 % 12244407 1.96 % 12192098 1.96 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21554461 1.73 % 8805585 1.41 % 12748876 2.05 %
Bisulfite_reads C2T 639724517 51.32 % 320912012 51.49 % 318812505 51.16 %
Bisulfite_reads G2A 585140938 46.95 % 293492361 47.09 % 291648577 46.80 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 498586996
Average Unique 80.00 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45683802956 35.93 % 17879774564 28.13 % 27804028392 43.74 %
Base Counts Overall C 17341639960 13.64 % 864414788 1.36 % 16477225172 25.92 %
Base Counts Overall G 17486314755 13.75 % 16664002108 26.21 % 822312647 1.29 %
Base Counts Overall T 45330112404 35.66 % 27530553437 43.31 % 17799558967 28.00 %
Base Counts Overall N 1292961357 1.02 % 628670819 0.99 % 664290538 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.998572792173371
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 595008495



Mapping Quality

Mapping Quality Histogram
K006294_9_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006294_9_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
pz_284.Bisulfite-Seq.DNA_Methylation.EGAX00001151326