/EXTERNAL BLUEPRINT/mapping_coverage/K006294_9_lane_gembs
BACK
SAMPLE K006294_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1171184404 |
100% |
105850857376 |
100% |
| Mapped |
1159021500 |
98.96 % |
104622404072 |
98.84 % |
| Passed |
924786312 |
78.96 % |
80964650084 |
76.49 % |
| NotPassed |
234235188 |
20.00 % |
23657753988 |
22.35 % |
| |
|
|
|
|
| LowMAPQ |
187404990 |
16.00 % |
18927903990 |
17.88 % |
| MateUnmapped |
12162904 |
1.04 % |
1228453304 |
1.16 % |
| Duplicate |
29256976 |
2.50 % |
2954954576 |
2.79 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
17444 |
0.00 % |
1761844 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17555768 |
1.50 % |
1773132568 |
1.68 % |
| Unmapped |
12162904 |
1.04 % |
1228453304 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
93398183793 |
100% |
| Passed |
75358929749 |
80.69 % |
| Trimmed |
3951229408 |
4.23 % |
| Clipped |
128259730 |
0.14 % |
| Overlapping |
12305273979 |
13.18 % |
| LowQuality |
1654490927 |
1.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |