/EXTERNAL BLUEPRINT/methylation/K006294_9_lane_gembs

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SAMPLE K006294_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26623360 20407789 76.65 %
NonRefCpG 326845 151055 46.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006294_9_lane_gembs_coverage_refCpG.png ./IMG//K006294_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006294_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006294_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006294_9_lane_gembs_quality_refcpg.png ./IMG//K006294_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006294_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6631800 13.87 % 4759455 11.83 % 115469 20.70 % 34325 10.19 %
Intermediate (0.3-0.7) 7628655 15.95 % 5028671 12.50 % 125560 22.51 % 55288 16.41 %
Methylated (0.7-1) 33553991 70.18 % 30436714 75.67 % 316678 56.78 % 247336 73.40 %
Median Methylation 0.870 0.890 0.770 0.880