/EXTERNAL BLUEPRINT/K006390_K006403_24_lane_gembs

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SAMPLE K006390_K006403_24_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1962451088 100.00 % 981225544 100.00 % 981225544 100.00 %
General Reads 1893766425 96.50 % 949679622 96.79 % 944086803 96.22 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 25861687 1.32 % 12959085 1.32 % 12902602 1.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 42822976 2.18 % 18586837 1.89 % 24236139 2.47 %
Bisulfite_reads C2T 993974324 50.65 % 498449042 50.80 % 495525282 50.50 %
Bisulfite_reads G2A 925653788 47.17 % 464189665 47.31 % 461464123 47.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 787111129
Average Unique 80.22 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73437363309 36.69 % 28849771024 28.83 % 44587592285 44.55 %
Base Counts Overall C 25310586908 12.64 % 1359632604 1.36 % 23950954304 23.93 %
Base Counts Overall G 25738893818 12.86 % 24416315151 24.40 % 1322578667 1.32 %
Base Counts Overall T 73232552573 36.59 % 44467676315 44.43 % 28764876258 28.74 %
Base Counts Overall N 2450614368 1.22 % 991610394 0.99 % 1459003974 1.46 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990357070829777
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 931624841



Mapping Quality

Mapping Quality Histogram
K006390_K006403_24_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006390_K006403_24_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345075_10
UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345061_14