/EXTERNAL BLUEPRINT/K006390_K006403_24_lane_gembs/UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345075_10

BACK

SAMPLE K006390_K006403_24_lane_gembs LANE UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345075_10

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 821049600 100.00 % 410524800 100.00 % 410524800 100.00 %
General Reads 799751669 97.41 % 401188896 97.73 % 398562773 97.09 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5296434 0.65 % 2654675 0.65 % 2641759 0.64 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16001497 1.95 % 6681229 1.63 % 9320268 2.27 %
Bisulfite_reads C2T 411723524 50.15 % 206519852 50.31 % 205203672 49.99 %
Bisulfite_reads G2A 393324579 47.91 % 197323719 48.07 % 196000860 47.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 341473471
Average Unique 83.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32344254574 38.62 % 12417570627 29.65 % 19926683947 47.59 %
Base Counts Overall C 9120019087 10.89 % 443873634 1.06 % 8676145453 20.72 %
Base Counts Overall G 9197272008 10.98 % 8771631500 20.95 % 425640508 1.02 %
Base Counts Overall T 32250211981 38.51 % 19824422450 47.34 % 12425789531 29.67 %
Base Counts Overall N 835301550 1.00 % 416031389 0.99 % 419270161 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988031900696821
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 392216605



Mapping Quality

Mapping Quality Histogram
UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345075_10.mapq.png



Read Length

Read Length Reads
101 410524800
101 410524800



Insert Size Plot

Insert Size Histogram
UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345075_10.isize.png