/EXTERNAL BLUEPRINT/mapping_coverage/K006390_K006403_24_lane_gembs
BACK
SAMPLE K006390_K006403_24_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1872172469 |
100% |
169381591502 |
100% |
| Mapped |
1855657306 |
99.12 % |
167713560039 |
99.02 % |
| Passed |
1519816135 |
81.18 % |
133793601768 |
78.99 % |
| NotPassed |
335841171 |
17.94 % |
33919958271 |
20.03 % |
| |
|
|
|
|
| LowMAPQ |
287064980 |
15.33 % |
28993562980 |
17.12 % |
| MateUnmapped |
16515163 |
0.88 % |
1668031463 |
0.98 % |
| Duplicate |
21625503 |
1.16 % |
2184175803 |
1.29 % |
| BadOrientation |
44 |
0.00 % |
4444 |
0.00 % |
| LargeInsertSize |
27482 |
0.00 % |
2775682 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
27123162 |
1.45 % |
2739439362 |
1.62 % |
| Unmapped |
16515163 |
0.88 % |
1668031463 |
0.98 % |
Base Level Counts
| Bases |
# |
% |
| Total |
153492005022 |
100% |
| Passed |
125843127925 |
81.99 % |
| Trimmed |
6620050215 |
4.31 % |
| Clipped |
488512471 |
0.32 % |
| Overlapping |
19209890783 |
12.52 % |
| LowQuality |
1330423628 |
0.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |