/EXTERNAL BLUEPRINT/K006301_13_lane_gembs/C006G5.Bisulfite-Seq.DNA_Methylation.EGAX00001195945_13

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SAMPLE K006301_13_lane_gembs LANE C006G5.Bisulfite-Seq.DNA_Methylation.EGAX00001195945_13

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1205353432 100.00 % 602676716 100.00 % 602676716 100.00 %
General Reads 1163760132 96.55 % 583931443 96.89 % 579828689 96.21 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20273002 1.68 % 10167581 1.69 % 10105421 1.68 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21320298 1.77 % 8577692 1.42 % 12742606 2.11 %
Bisulfite_reads C2T 621471546 51.56 % 311821825 51.74 % 309649721 51.38 %
Bisulfite_reads G2A 562561588 46.67 % 282277199 46.84 % 280284389 46.51 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 479338648
Average Unique 79.53 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44246794565 35.99 % 17086232666 27.79 % 27160561899 44.18 %
Base Counts Overall C 16591124341 13.49 % 838031303 1.36 % 15753093038 25.63 %
Base Counts Overall G 16846566722 13.70 % 16027307115 26.07 % 819259607 1.33 %
Base Counts Overall T 44026339144 35.81 % 26914100090 43.78 % 17112239054 27.84 %
Base Counts Overall N 1235225292 1.00 % 607353858 0.99 % 627871434 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989650357509913
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 574237857



Mapping Quality

Mapping Quality Histogram
C006G5.Bisulfite-Seq.DNA_Methylation.EGAX00001195945_13.mapq.png



Read Length

Read Length Reads
101 602676716
101 602676716



Insert Size Plot

Insert Size Histogram
C006G5.Bisulfite-Seq.DNA_Methylation.EGAX00001195945_13.isize.png