/EXTERNAL BLUEPRINT/mapping_coverage/K006301_13_lane_gembs
BACK
SAMPLE K006301_13_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1143260589 |
100% |
101336133668 |
100% |
| Mapped |
1131668946 |
98.99 % |
100165377725 |
98.84 % |
| Passed |
907337856 |
79.36 % |
77507937635 |
76.49 % |
| NotPassed |
224331090 |
19.62 % |
22657440090 |
22.36 % |
| |
|
|
|
|
| LowMAPQ |
187654146 |
16.41 % |
18953068746 |
18.70 % |
| MateUnmapped |
11591643 |
1.01 % |
1170755943 |
1.16 % |
| Duplicate |
20522231 |
1.80 % |
2072745331 |
2.05 % |
| BadOrientation |
26 |
0.00 % |
2626 |
0.00 % |
| LargeInsertSize |
13860 |
0.00 % |
1399860 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16140827 |
1.41 % |
1630223527 |
1.61 % |
| Unmapped |
11591643 |
1.01 % |
1170755943 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
91636527047 |
100% |
| Passed |
72648992266 |
79.28 % |
| Trimmed |
3865059426 |
4.22 % |
| Clipped |
96601764 |
0.11 % |
| Overlapping |
14031987648 |
15.31 % |
| LowQuality |
993885943 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |