/EXTERNAL BLUEPRINT/methylation/K006301_13_lane_gembs

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SAMPLE K006301_13_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26632205 20946240 78.65 %
NonRefCpG 334198 158578 47.45 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006301_13_lane_gembs_coverage_refCpG.png ./IMG//K006301_13_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006301_13_lane_gembs_coverage_nonRefCpG.png ./IMG//K006301_13_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006301_13_lane_gembs_quality_refcpg.png ./IMG//K006301_13_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006301_13_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5937853 12.47 % 4554970 11.21 % 111031 19.52 % 31596 9.05 %
Intermediate (0.3-0.7) 7491122 15.73 % 5200198 12.80 % 126636 22.26 % 58395 16.73 %
Methylated (0.7-1) 34196277 71.80 % 30883798 76.00 % 331261 58.23 % 259017 74.21 %
Median Methylation 0.850 0.870 0.770 0.860